Gene detail

Gene detail information of Glyur000090s00011387

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12930.1	6.00E-75	Lojap-related protein
NR	XP_004488829.1	1.41E-144	PREDICTED: protein Iojap, chloroplastic-like [Cicer arietinum]
COG	YP_007081716.1	4.00E-22	iojap-like ribosome-associated protein [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9LDY9\|IOJAC_ARATH	5.00E-93	Protein Iojap, chloroplastic (Precursor)
trEMBL	tr\|G7IJA0\|G7IJA0_MEDTR	6.00E-144	Ribosome silencing factor {ECO:0000313\|EMBL:AES66451.1}

Sequence

Transcript Sequence

>Glyur000090s00011387.1
GCTTCTCATTTCATTTCCCTATCTTTTTTGTTTCGAAAATATCTCTTTTTGCCGCGACAGAGACCAATGCTGCCATCATCCACTCTCCTATCACTCGCCGGAGCCGGTGCCGGCGTCCCGGCGAGCTTTTCAGGCGAAATGGGTCGTCCCGAAACCAAGTGTTCTCCAAAACCCAACAAGGTTTTCAGCAGTTCGTGCAGAAAGGTGCTTCCTTTACAACGGCACAGCATCAACGGTTTGAACTCGAAGAGAAGGAACTCACTGTTGTGCTTTACATTTGGTAAAGAAGCCAAAGACAATTTTTTCTCGGATGTAAGTGAAGATACTGATGATATGTACGATGAATTATTAAATAATTATGGAAAAGTNGTATATAAGAGGAAAGACCAAAAGCCTGCAAGTGAGGTTGATGATGATGCCGAAAGCCTGTCATTTGCTGTGGAAATGGCCAAAGTTGCAAGTGAGGTCAAGGCAGCAGATATAAAGGTCTTGTTTGTGAAGCCACTTGTTTACTGGACTCGGTTTTTTATCATAGCTACAGCATTTTCTCGCCCCCAGATTGATGCTATCGGGTCCAGAATTAGAGATAGAGCTGAGCAGAAATATGGAAAAATTCCAAGTGGAGACTCAAAACCCAACTCATGGACCCTGTTGGACTTCGGTGATGTTGTTGTCCACATATTCCTTCCCCCACAGAGAGCTTTCTATAATTTGGATGAGTTTTATGGTAATGCAACACCAGTAGAGCTGCCTTTTGAAAATCAACCACCGTTTCGCAGTTGAGGGAGCCTATGGTTGGTAAATGAAGAAACTTAAAGATGATGGAGACAGTTGATGGTGAGCTTTGAGAAGGCCAAGAATCACTGCCAATTTTGGTTTATTTACATGAGTATGATGCAAACAATTCAGTGCTCTTATCCACACAAGACTTTGCTTTCTTTTAGATGGGTGGGAGTGAAGGATCATTCTGTTGGGGAAGGGAAAAGGACAATATTAATGCATTCAGTTTTTTTTTCTCAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	45096	49300	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000090s00011387.1	PF02410.10	Oligomerisation	126	220	2.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.932
SRR1783600	control	10.796
SRR1783602	moderate drought stress	11.097
SRR1811619	moderate drought stress	10.711

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.852
DRR006520	Root Summer glycyrrhizin high producing strain	10.501
DRR006521	Root Winter glycyrrhizin high producing strain	8.672
DRR006522	Root Winter glycyrrhizin high producing strain	8.363
DRR006523	Root Summer glycyrrhizin low producing strain	19.889
DRR006524	Root Summer glycyrrhizin low producing strain	19.127
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.639
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.539

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.061
SRR2868004	Drought Stress (root)	8.706
SRR2967015	Control (root)	11.884

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.522
SRR9715740	Leaf	69.504
SRR9715741	Leaf	41.083
SRR9715739	Root	2.068
SRR9715742	Root	5.577
SRR9715743	Root	4.987

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.590
SRR8749028	MeJA induced 9h	8.001
SRR8749029	MeJA induced 9h	5.841
SRR8749030	Uninduced	13.039
SRR8749031	Uninduced	6.924
SRR8749032	Uninduced	5.885

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.379
SRR8400027	Control - Root	9.813