Gene detail

Gene detail information of Glyur000090s00011380

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12920.1	3.00E-46	SBP (S-ribonuclease binding protein) family protein
NR	XP_003596191.1	5.86E-149	S-RNase binding protein [Medicago truncatula]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	8.00E-90	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|G7IH38\|G7IH38_MEDTR	2.00E-149	SBP (S-ribonuclease-binding protein) family protein, putative {ECO:0000313\|EMBL:AES66442.1}

Sequence

Transcript Sequence

>Glyur000090s00011380.1
ATTTAAAATCATTTAATAATAATGATGTGTGGACCGACGAGGGGAAAACCCTGAATAAAAACCCCACCAATACAGAGTTGTCACCTCTCTATTTTTGCATGCCTTCATTTTCTTCCGTTTCCTTCTTTTCACTCACTACTTTCTGTATTTTCGGTTTTCCCATCCCCTCTCTCTCTCTCTCTCACACACACACACACACACACACCAAGTGCTATATTATCAACCTCCCAGCGAAGACTCCAAATAAGAACACGCCAAAAACGCAGATACATATAGAAGAGATAATAAAAACCCCAAGAAAAGCAAATATCCTTCATTTCTTCTCTTCTCTAACATGGCCGTTGAGGCTCGCCATCCTAATCTCTTCTCCCCTCAACTCATAGGCAACAACAGGGAAATGATGAACCCCATTGAGACAAACATGAATAATCTCTACAACACCCAGATGGGTTATTCTTCACTGCTTCCATCATCGGAGACNCTGCTACCAGCGGCAGCGTACAACACACTCGTCACCGGCAATTCGTTTCCTCAGAAAACCGCCATGAAATCTGACAGCGGACTCACCTACACCTACAATGTCCCATCCACCTTATCTCGAAAGCGTTCAAGGGACACCTCAACTTCAATCAACAACAACAACAACGACAACTTCCCTTTCCCTTCCTACAAGTCTTGCTCCTCCTCTTCCTCTTTCTCCTTCCTTGGTGAAGACATTTCCCTTCAGATCCAACAGCAACAACTCGACATCGATCAACTCATTGCCCAACGAATGGAGAAGGTGAGAATGGAGATAGAGGAAAAACGAAAGAGGCAAGCGAGGAGGCTAATAGAGGCAATAGAACTAGGCGTGATGAAGAGACTGAAAGCAAAAGAAGAAGAGATAGAGAAGATTGGGAAGCTGAACTGGGCTTTGGAAGAAAGGGTCAAGTCTCTTTGCATGGAGAATCAAATATGGCGTGATTTGGCACAAGCGAATGAAGCCACGGCGAATGCTTTAAGGAACAATCTAGAACAGGTGCTTGCACAACGCGGCGGCGACGACGACGGAGCCACCGTGTCACCGGCNATGGTTCCGGTGGTGATGGACGACGCGGAGTCTTGCTGTGGCAGCACAGAGGGGGACAATGATGGTGATGGTGATGGTGATGAGGATGGGTGGCGCACGTTAGTGGGGTGCGCGAAGGATAAGGACGTTGGTGTTGGTGGTGGTTGTAGGGGAATAATGAAAATANCGAGGGACTGTGGTGGGAGCAATGGTGGTGGCAGGAGATTGTGCAGGAAGTGTGGGAAAGAGGAGTCGTGCGTGCTGATATTGCCGTGCAGGCACCTCTGTCTATGTACTGTTTGTGGGTCTACCCTTCACACTTGTCCTATCTGTAAATCCTTCAAGACTGCCAGCGTCCATGTTAACATGTCTTAATTTTGGATAATTATTATTAGACACTAGAACAAAAAAAAGGAGACAATTTTTCACATNATTGGAAGGAAAAAAAGAAGTAATTTTGATCCCAAATCTCTCTCTCTCTCTCTCCTCATTACATCAATTTTTTTTCATATGTTTTTACCCTTTATTGTTCTTAGTGGTATGGTTTTACTAGTAGAATGGTTTAGATGTGAACATGTGAAACATTAGATAATGTCAAGGCAATTGCGATTAGCAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	6015	7876	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0016567 protein ubiquitination

GO:0031347 regulation of defense response

cellular_component
GO:0005634 nucleus

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000090s00011380.1	PF13920.1	zf-C3HC4_3	313	353	6.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	60.085
SRR1783600	control	61.293
SRR1783602	moderate drought stress	104.620
SRR1811619	moderate drought stress	104.193

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	99.256
DRR006520	Root Summer glycyrrhizin high producing strain	97.207
DRR006521	Root Winter glycyrrhizin high producing strain	54.210
DRR006522	Root Winter glycyrrhizin high producing strain	53.514
DRR006523	Root Summer glycyrrhizin low producing strain	37.369
DRR006524	Root Summer glycyrrhizin low producing strain	38.353
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.029
SRR2868004	Drought Stress (root)	61.617
SRR2967015	Control (root)	38.687

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.453
SRR9715740	Leaf	4.176
SRR9715741	Leaf	2.882
SRR9715739	Root	22.650
SRR9715742	Root	17.324
SRR9715743	Root	19.467

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.676
SRR8749028	MeJA induced 9h	38.683
SRR8749029	MeJA induced 9h	11.881
SRR8749030	Uninduced	23.352
SRR8749031	Uninduced	73.769
SRR8749032	Uninduced	18.490

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.393
SRR8400027	Control - Root	13.046