Gene detail

Gene detail information of Glyur000089s00008831.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75540.1	2.00E-45	salt tolerance homolog2
NR	XP_003523511.1	2.69E-107	PREDICTED: B-box zinc finger protein 20-like [Glycine max]
Swissprot	tr\|Q9LQZ7\|BBX21_ARATH	1.00E-61	B-box zinc finger protein 21 {ECO:0000303\|PubMed:19920209}
trEMBL	tr\|I1JSK5\|I1JSK5_SOYBN	6.00E-108	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G01120.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	350216	351164	-

Gene family

Gene family	subfamily
Transcription Factors Family	DBB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008831.1	PF00643.19	zf-B_box	4	35	3.40E-05
Glyur000089s00008831.1	PF00643.19	zf-B_box	56	92	8.50E-07

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.418
SRR1783600	control	0.333
SRR1783602	moderate drought stress	0.511
SRR1811619	moderate drought stress	0.519

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.760
DRR006520	Root Summer glycyrrhizin high producing strain	0.753
DRR006521	Root Winter glycyrrhizin high producing strain	1.540
DRR006522	Root Winter glycyrrhizin high producing strain	1.523
DRR006523	Root Summer glycyrrhizin low producing strain	0.708
DRR006524	Root Summer glycyrrhizin low producing strain	0.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.926
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.864

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.147
SRR2868004	Drought Stress (root)	0.294
SRR2967015	Control (root)	1.450

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.093
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.149
SRR9715739	Root	0.066
SRR9715742	Root	0.000
SRR9715743	Root	0.257

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.071
SRR8749028	MeJA induced 9h	0.162
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.003

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.036
SRR8400027	Control - Root	1.825