Gene detail

Gene detail information of Glyur000089s00008819

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20400.1	6.00E-98	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	NP_001241442.1	0	uncharacterized protein LOC100799195 [Glycine max]
COG	YP_004114437.1	1.00E-20	2OG-Fe(II) oxygenase [Pantoea sp. At-9b]
Swissprot	tr\|Q39224\|SRG1_ARATH	2.00E-65	Protein SRG1
trEMBL	tr\|C6TEW0\|C6TEW0_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU20362.1}

Sequence

Transcript Sequence

>Glyur000089s00008819.1
ATTTTATTTTATTTCGTGTTTTTTTTTATTCCAATTCTGCTGCCAATGTAGCGGTGCGCATACTGCAAACGATTTTTCAACCACGAAAGCCGCCATCGGGCATCGTGTCGTGACGTGACAAGTGACGACCGAAGAAACATAAGAAAGAAAACTTCTTATTAATCAAGAAAACTTCCTATATATTTTAGTGCCACTTAATTTGACCTCTGTTCTTGTAAATTACATTCNCAAAGACTCATGGCAGCATCTCTTGCTTCGGCGGAGGTAGAGAAACTTGATAAATCTGTGCAAGAGCTGTTCTTGACTTCTGAGAATCTTCCAAAGAATTATGTGTACGAGGAAGGTGGTGCTGGATTTCGAGATGCTCTTCTTCCATCAGACTCAGACGCAGAGGATTCTATTCCAGTGGTTGACCTTCACCACCTCACTTCTCCATCTACGGCACAGCCACAAGAGCTTGCTAAACTCCACCATGCTCTCAATTCATGGGGCTGCTTTCAGGCAATAAACCATGGTATGACAAGCTCGTTTCTTGACAAAGTCAGAGATATTTCAAAGCAATTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATATGCAAGGGAACCAAACGATATTGAAGGATATGGAAAGGATGTGATATTTTCAGAAAATCAAAGGCTTGATTGGACTGACAGAGTATACCTGAAGGTACAGCCTGAAGATCAGAGGAAGTTCAAAGTTTGGCCCCAAAAACCCAATGATTTCAGGAGTATTGTGCTACAGTATACTGAAAGTCTAAGGCTGCTAACTGAAGTAATTTTAAGGGCCATGGCAAAGTCACTGAATTTGGAAGAGGACTGCTTCCTAAACGAATGTGGAGAGAGAGCTGAAATGGTTTTGAGATTCAACTACTATCCTCCATGCCCAATGGCTGATCATGTTCTAGGCCTGAAGCCACATGCTGATGGGTCAACTATAACTTTTTTGTTGCAAGATAAAGAGGTAGAAGGCTTCCAAGTCCTCAAAGATAATCAGTGGTTTAAAATAATGAGCAATGGGATTTTCCGGAGCCCAATACACAGAGCAGTGGTGAATGCAGAAAAGGAAAGGCTCACAGAAGCTATGTTCTGCGCCCCAGATTCAGAAAAGGAGATTAAACCCCTCGANAAACTAGTGAACGAGTCAAGGCCAAAATTATACAGACCCGTCAAAAATTATGCTGAAATCTATTTCCAGTATTATCAACAAGGAAAAAGGCCAATTGAAGCTTCAAAGATTTAATTTTTAATAAACTAGAATACTTCTCGGAATTTTGTCAAATAGAACTATAGAAGATACTAATGAAAATGAAATAAATGTGTGTAACAAATATTATAAGTTGTGGCTGCTACTTTGAATTAAATAAATGTTGATTTGTATGATAATTTAAAGGGGACATATATATTGCAGTGGTATATGGAGTTTTAATTGCATGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	264129	267246	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008819.1	PF14226.1	DIOX_N	55	165	4.20E-26
Glyur000089s00008819.1	PF03171.15	2OG-FeII_Oxy	214	294	8.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.377
SRR1783600	control	18.811
SRR1783602	moderate drought stress	22.551
SRR1811619	moderate drought stress	22.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.874
DRR006520	Root Summer glycyrrhizin high producing strain	11.168
DRR006521	Root Winter glycyrrhizin high producing strain	35.102
DRR006522	Root Winter glycyrrhizin high producing strain	34.955
DRR006523	Root Summer glycyrrhizin low producing strain	19.915
DRR006524	Root Summer glycyrrhizin low producing strain	20.098
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.932
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.886

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.679
SRR2868004	Drought Stress (root)	22.173
SRR2967015	Control (root)	12.355

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.967
SRR9715740	Leaf	66.336
SRR9715741	Leaf	97.081
SRR9715739	Root	2.161
SRR9715742	Root	9.083
SRR9715743	Root	7.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.059
SRR8749028	MeJA induced 9h	74.433
SRR8749029	MeJA induced 9h	80.580
SRR8749030	Uninduced	222.400
SRR8749031	Uninduced	354.646
SRR8749032	Uninduced	171.660

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.204
SRR8400027	Control - Root	23.769