Gene detail

Gene detail information of Glyur000089s00008807

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34710.2	0	arginine decarboxylase 2
NR	XP_003522832.1	0	PREDICTED: arginine decarboxylase-like [Glycine max]
COG	YP_005070592.1	3.00E-168	arginine decarboxylase [Arthrospira platensis NIES-39]
Swissprot	tr\|Q39827\|SPE1_SOYBN	0	Arginine decarboxylase
trEMBL	tr\|I1JSI5\|I1JSI5_SOYBN	0	Arginine decarboxylase {ECO:0000256\|RuleBase:RU003740}

Sequence

Transcript Sequence

>Glyur000089s00008807.1
ATGCCTGCGTTGGCATGTTGTTTGGACGCTGCAGCGCCNCCCGCCTACGCATTCGCCGGCGACATCTCTTTCCCGGCGCCGGTCCATTTTACCGGCGTACCTACGGCAACGACCGACGACAACGAAAATGACAACGGCAGCCTCTGGTCACCGTCCCTCTCCTCCGNCCTCTACAACGTCGACGGGTGGGGCGGTCCCTACTTCGGCGTCAACTCCGCCGGGAACATCTCCGTGATGCCGCATGGGTCGGAGACGCTACCTCACCAGGAGATTGATTTGCTGGAGATCNTGAAGAAGGCCTCCGCCTCCAAATCTTGCGGTGGTCTTGGCCTTCAGCCTCCGCTCATTGTTCGGTTCCCCGATATTTTGAGGAACCGGTTGGAGTCCCTTCAATCGGCGTTCGACCACGCAATCGAGTCGGTGGGATACGAGTCTCATTACCAGGGTGTTTACCCCGTGAAGTGCAACCAGGACCGGTTCGTGGTGGAAGACATCGTGCGGTTCGGTTCTTCGTTCCGGTTCGGTCTGGAGGCNGGGTCCAAGCCGGAGCTCCTTCTTGCCATGAGCTGTTTGTGCAAGGGAAGCCCCGAGGCCCTTGTCATCTGCAACGGTTTCAAGGACGCAGAATATATATCGCTCGCCCTTGTGGCGAGGAAGCTTGCCCTGAATACCGTGATTGTCCTGGAGCAAGAAGAAGAGCTCGATTTGATCATTGATCTGAGCAAGAAGCTGAGGATTCGTCCCGTGATTGGAATNCGTGCGAAGCTGAGGACGAAGCATTCGGGCCATTTCGGGTCCACTTCGGGTGAGAGGGGAAAATTCGGGTTGACAACCGCTCAGATTTTGAGGATGGTGAGGAAGATGGAGCACGCGGCTATGCTTGATTGTCTTCAATTGCTGCATTTCCACATTGGTTCTCAGATTCCTTCAACCGCGTTGCTGGCCGATGGGGTNGGAGAAGCGGCGCAGATCTATTGCGAGCTGGTTCGACTCGGTGCTCACATGAGGGTCCTCGATATTGGTGGCGGTTTGGGGATAGATTACGACGGTTCGAAGTCCAGCGATTCCGATGTCTCTGTTGAGTATGGCCTCAGGGAGTATGCAGCTGCGGTTGTTGGCGCGGTTCAGCGTGTCTGCGACCGAAGGTCCATCAGGCACCCTGTAATCGTCAGCGAAAGTGGCAGGGCCATNGTCTCTCATCATTCAGTCCTAATTTTCGAAGCTGTTGGAGCCACCAGCAATGGAGCGCCCCCTGCATTGTCCACCCTGGCACTTGAGTATTTGGTGGAGGGGCTCTCGGAGGATGCTCGCGCCAATTATCGCAATCTCTCTGATGCGGCTATTCGTGGGGATTACGAGAGCTGCTTGCTGTANACGGAGGAGATGAAACAGCGATGCGTGGAGCAGTTCAAGCAGGGGTGTCTGGGTATGGAGGAGCTTGCTGCCGTGGACGGGCTTTGCGATTTGGTGAGGAAGGCGGTGGGGGAGGCTGAACCGGTTCGGAGGTACCACGTGAACCTTTCAATTTTCACTTCCATTCCCGATGTATGGAGCATTGAGCAGGTGTTTCCCATTGTCCCCATTCACCGCCTCGACGAGAAGCCCTCCGTGAGGGCGATCCTCTCGGACCTGACCTGTGACAGCGATGGCAAGATCGACAGGTTCATCAACGGAGAGTCGAGCCTGCCGCTCCATGAGCTCGAAGGTGGAAGGTACTACTTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCNCTCGGTGGAGTCCACAACCTGTTTGGTGGCCCCAGCGTTGTTCGTGTGTCGCAGAGTGACGGTCCTCACGGCTTCGTTGTCACGCGTGCCGTGCCGGGGACTTCCAATAGGGACATCCTTCGAGTGATGCAGCACCAGCCGGAGCTCATGTATGAGACGCTCAAGCACCGCGTGCAGGAGTTTGCACACGATGATGACCTCAACGCTGCGGCGCTGGCTGCTGGCNTTGCCCGCTCCTTCAACAACACGCCTTATCTGGTGGCGCCACTGCTGCCATCGTCATCTTCATCGTGTGCTGCTGACGATTCTGCTGTTGGTGATTCTGCTTCTTCCACTGCCGGAGACGANGAGCACGGNCTCTGGTCTTATTGCTGTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	209809	211944	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01583	E4.1.1.19	EC:4.1.1.19	Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006527 arginine catabolic process

GO:0008295 spermidine biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008792 arginine decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008807.1	PF02784.11	Orn_Arg_deC_N	131	400	8.80E-56
Glyur000089s00008807.1	PF00278.17	Orn_DAP_Arg_deC	495	601	5.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.515
SRR1783600	control	5.796
SRR1783602	moderate drought stress	3.281
SRR1811619	moderate drought stress	3.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.204
DRR006520	Root Summer glycyrrhizin high producing strain	12.874
DRR006521	Root Winter glycyrrhizin high producing strain	3.351
DRR006522	Root Winter glycyrrhizin high producing strain	3.563
DRR006523	Root Summer glycyrrhizin low producing strain	8.541
DRR006524	Root Summer glycyrrhizin low producing strain	8.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.319
SRR2868004	Drought Stress (root)	120.815
SRR2967015	Control (root)	71.561

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.381
SRR9715740	Leaf	10.025
SRR9715741	Leaf	8.037
SRR9715739	Root	166.609
SRR9715742	Root	47.860
SRR9715743	Root	69.924

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	136.624
SRR8749028	MeJA induced 9h	94.370
SRR8749029	MeJA induced 9h	174.767
SRR8749030	Uninduced	115.241
SRR8749031	Uninduced	53.295
SRR8749032	Uninduced	102.301

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.782
SRR8400027	Control - Root	50.561