Gene detail

Gene detail information of Glyur000089s00008802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34710.2	0	arginine decarboxylase 2
NR	XP_003522832.1	0	PREDICTED: arginine decarboxylase-like [Glycine max]
COG	YP_007161911.1	3.00E-145	arginine decarboxylase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q39827\|SPE1_SOYBN	0	Arginine decarboxylase
trEMBL	tr\|I1JSI5\|I1JSI5_SOYBN	0	Arginine decarboxylase {ECO:0000256\|RuleBase:RU003740}

Sequence

Transcript Sequence

>Glyur000089s00008802.1
ATGTCTAGCTTGAAATACGGGCCCCACATTGCAGAAGCCACGCGGCAACTCGACGCCGCTAAAGTGCTAAGCTTATTTGTGAAGCGGAATCCCAAATCCAAAAAACCTAGTGGTGGTGGGTGGTTGTTGTTGACTCCGTTTCACAGAAATCTTGCTCCTGAAGGGTCGCTGTGGGGAAACCAGTGCTGTGCGGGATGCCTGCGTTTGGCATGTTGTTTGGACGCTGCAGCGCCTCCCGCCTACGCATTCGCCGGCGACATCTCTTTCCCGGCGCCGGTCCATTTTACCGGCGTACCTACGGCAGCCACCGACGACAACGAAAATGACAACGGCAGCCTCTGGTCACCGTCCCTCTCCTCCGCCCTCTACAACGTCGACGGGTGGGGCGGTCCCTACTTCGGCGTCAACTCCGCCGGGAACATCTCCGTGATGCCGCATGGGTCGGAGACGCTACCTCACCAGGAGATTGATTTGCTGGAGATCGTGAAGAAGGCCTCCGCCTCCAAATCTTGCGGTGGTCTTGGCCTTCAGCCTCCGCTCATTGTTCGGTTCCCCGATATTTTGAGGAACCGGTTGGAGTCCCTTCAATCGGCGTTCGACCACGCAATCGAGTCGGTGGGATACGAGTCTCATTACCAGGGTGTTTACCCCGTGAAGTGCAACCAGGACCGGTTCGTGCGTGGAAGACATCGTGCGGTTTCGGTTCTTCGGTCCAAGCCGGAGCTCCTTCTTGCCATGAGCTGTTTGTGCAAGGGAAGCCCCGAGGCCCTTGTCATCTGCAACGGTTTCAAGGACGCAGAATATATATCTCTCGCCCTTGTGGCGAGGAAGCTTGCCCTGAATACCGTGATTGTCCTGGAGCAAGAAGAAGAGCTCGATTTGATCATTGATCTGAGCAAGAAGCTGAGGATTCGTCCCGTGATTGGAATGCGTGCGAAGCTGAGGACGAAGCATTCGGGCCATTTCGGGTCCACTTCGGGTGAGAGGGGAAAATTCGGGTTGACAACCGCTCAGATTTTGAGGATGGTGAGGAAGATGGAGCACGCGGCTATGCTTGATTGTCTTCAATTGCTGCATTTCCACATTGGTTCTCAGATTCCTTCAACCGCGTTGCTGGCCGATGGGGTCGGAGAAGCGGCGCAGATCTATTGCGAGCTGGGTCCTCGATATTGGTGGCGGTTTGGGATAGATTACGACGGTTCGAAGTCCAGCGATTCCGATGTCTCTGTTGAGTATGGCCTCAGGGAGTATGCAGCTGCGGTTGTTGGCGCGGTTCAGCGTGTCTGCGACCGAAGGTCCATCAGGCACCCTGTAATCGTCAGCGAAAGTGGCAGGGCCATAGTCTCTCATCATTCAGTCCTAATTTTCGAAGCTGTTGGAGCCACCAGCAATGGAGCGCCCCCTGCATTGTCCACCCTGGCACTTGAGTATTTGGTGGAGGGGCTCTCGGAGGATGCTCGCGCCAATTATCGCAATCTCTCTGATGCGGCTATTCGTGGGGATTACGAGAGCTGCTTGCTGTATACGGAGGAGATGAAACAGCGATGCGTGGAGCAGTTCAAGCAGGGGTGTCTGGGTATGGAGGAGCTTGCTGCCGTGGACGGGCTTTGCGATTTGGTGAGGAAGGCGGTGGGGGAGGCTGAACCGGTTCGGAGGTACCACGTGAACCTTTCAATTTTCACTTCCATTCCCGATGTATGGAGCATTGAGCAGGTGTTTCCCATTGTCCCCATTCACCGCCTCGACGAGAAGCCCTCCGTGAGGGCGATCCTCTCGGACCTGACCTGTGACAGCGATGGCAAGATCGACAGGTTCATCAACGGAGAGTCGAGCCTGCCGCTCCATGAGCTCGAAGGTGGAAGGTACTACTTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTCGGTGGAGTCCACAACCTGTTTGGTGGCCCCAGCGTTGTTCGTGTGTCGCAGAGTGACGGTCCTCACGGCTTCGTTGTCACGCGTGCCGTGCCGGGGACTTCCAATAGGGACATCCTTCGAGTGATGCAGCACCAGCCGGAGCTCATGTATGAGACGCTCAAGCACCGCGTGCAGGAGTTTGCACACGATGATGACCTCAACGCTGCGGCGCTGGCTGCTGGCATTGCCCGCTCCTTCAACAACACGCCTTATCTGGTGGCGCCACTGCTGCCATCGTCATCTTCATCGTGTGCTGCTGACGATTCTGCTGTTGGTGATTCTGCTTCTTCCACTGCCGGAGACGATGAGCACGGCCTCTGGTCTTATTGCTGTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	193069	197548	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01583	E4.1.1.19	EC:4.1.1.19	Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006527 arginine catabolic process

GO:0008295 spermidine biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008792 arginine decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008802.1	PF02784.11	Orn_Arg_deC_N	196	450	1.10E-36
Glyur000089s00008802.1	PF00278.17	Orn_DAP_Arg_deC	545	651	6.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.609
SRR1783600	control	3.449
SRR1783602	moderate drought stress	2.275
SRR1811619	moderate drought stress	2.049

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.766
DRR006520	Root Summer glycyrrhizin high producing strain	10.230
DRR006521	Root Winter glycyrrhizin high producing strain	2.543
DRR006522	Root Winter glycyrrhizin high producing strain	2.363
DRR006523	Root Summer glycyrrhizin low producing strain	6.521
DRR006524	Root Summer glycyrrhizin low producing strain	7.016
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.427
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.855
SRR2868004	Drought Stress (root)	70.914
SRR2967015	Control (root)	37.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.418
SRR9715740	Leaf	4.229
SRR9715741	Leaf	5.283
SRR9715739	Root	74.917
SRR9715742	Root	25.497
SRR9715743	Root	36.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.863
SRR8749028	MeJA induced 9h	42.930
SRR8749029	MeJA induced 9h	69.664
SRR8749030	Uninduced	47.091
SRR8749031	Uninduced	25.068
SRR8749032	Uninduced	28.295

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.900
SRR8400027	Control - Root	24.051