Gene detail

Gene detail information of Glyur000089s00008801.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38890.1	0	FMN-linked oxidoreductases superfamily protein
NR	XP_003522816.1	0	PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Glycine max]
COG	YP_001179406.1	2.00E-42	putative TIM-barrel protein, nifR3 family [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q9T0J6\|DUS3L_ARATH	0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
trEMBL	tr\|K7KHG3\|K7KHG3_SOYBN	0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)] {ECO:0000256\|RuleBase:RU291113}

Sequence

Transcript Sequence

>Glyur000089s00008801.1
AACGGTTTCATTAAACCCTACCCTCTGTTTCCCAACCAAGTTCTCCAAATTGTATTTCCTGTGGCGAGACCAACGCCGAACGAAGCAAACTCATATCCCATGTCGTTAGGTTAGCATTTAGCACTACTACTACTACTACTACTATTACTACTCCAAGAGCAACAACCTTAACAACAGGAGCGTTTTTCCGAGTGGACCGACATGGAAGGGGACGAGAACGAGTCTCAGCATCAGCAGGGACACGGAGGTTCGGCAGTGTCTGAGCAAACCCCAGAGCAACTCGTGGCCAGGTCCATAGCTCCTGTCAAGAAGGACTTCCTTCGTCCTCCTCCCGTTCGGGCTTCCCCTCCAAACGACGACGTTTCCATCGCCAACGACAAGACCCCTGTTCTCGCCAAGGAGAAGAAGTCCAAGCGCCAACTCAAACGCGAACGTCGTCAGGAACAAAAGTCGGCACGAAACCTGTGTCCGGAAATTGCCAAGACAGGTGATGTTAGTTCGTGTCGTTATAAAGACAAGTGTCGCTTCAGCCATGATTTAGAAGCTTTCAAGGCACAGAAACCGGATGATCTGGAGGGACAGTGTCCTTTCTTTAAATCTGCTGAAGGCTCTTGCCCTTATGGGTTGGCGTGTAGATTTTCGAGTACGCATGAGGAGGGTATGCTGCCTCCTCCCAATGGATTGAAGAGAGGTTCCGAGGTAAATGGATTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGTTCAGCTTCCCCAAGGCGGATGCCAATCTCAAAAGTCTTGGCCTCTTGGGACCCAATAGGTCAAAAAGGAATGACTTGGAAAATAAAGATGGTGGCGGCAAATGCAATCAGTCTGATGACAATGGCTCTTGTGTGGCTACGTCTGACTCAGGTTCTAAGTTAGAATGCTCTACAGAAGTTATAAAGGATGATGATTTTAATAGAGAACTTGAATCTGATATACCTTGTCCTCAGAAGAGAAGAAAAACTGCAGAAAATTATGATCCCGGGGAGACAGAAAGTGAAGGTGTGAGCATTATTGAGCAAATTGTTGACACAAGCTGCATAAGATCTGAACCAGAAGCAGAAACTGATGCTATAACCCCAGAAACCGACCTTAGCTTGAAGCTGCACTTGCGTGAAAAGAAGCTTATNGATTACAGGGAGAAGCTGTATCTTGCACCCTTGACCACTGTTGGAAATCTTCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATATTTTGCAGGGTCAAGCATCAGAGTGGGCATTGCTAAGACGTCATTCATCTGAAGATTTATTTGGTGTGCAAATCTGTGGGGCATATCCAGATACTGTGGCGCGAACAGTTGAACTAATAGAACAGGAATGTACAACAGATTTTATTGATATAAATATGGGCTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTAACAAAACCAATGCGGATGAAAAGTATTATAGAAGTAGCTTCAGGCACAGCAGATATACCAATAACTGTCAAGGTANGAACAGCTTATTTTGAAGGGAAGAATCGCATTGACTCTCTGATATCAGACATTGAGTCCTGGGGAGCTAGTGCGGTGACAATACACGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTACATATATCAGTGTGCCAGGAAAGCCCCTAACACTTTGCCAGTAATGGGGAATGGAGATGTTTTTTCTTTTGAAGACTGGAACAACCACAAAACTCAATGTCCTGAACTTGCCACATGCATGATTGCCCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGAGAGCGACTAAATATTCTCAAAGATTTTGTGCATTTTGGCCTTGAACACTGGGGTTCTGACACAAAAGGGGTGGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACAGTTGTAGGTACATACCTGTTGGTCTTTTGGATATACGAATATCAGAGATGGTACTCGGCAAGGTTCCAGATGGCTTTACATTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTGATTCTGGAGTTTATTTTCTTCTCAATTGCTGATTCATGAAGAGACATATGTGGGAAGTAGTATTTGATGCCTTCCCTGTTTCTTGTCCCCCCGGTTAGTTTGAGAAAGCCGAGGGTCAGTGTGCAATGCATTCTTATTGCTCTCTTTCATTGGGGGAGTTTTTCATCATTGACCTTGACTTTTCAACCCACATACTATAGCTTCACCCCTCTACTAAGAAACAAAATATTTAATAATCATTGACATTTGAAATGTAAGCATTAATTGTTCTTGGACTTTTTTAGAGTCATTCCAACTTTTACATGCTTGGGTCAATTTGAATTTTCTACTTGCACAGCGATATTTTTTTCCCATCTGTTTGAATAGAAGTGGAGCTGTCATGAGGGTGGTGGTTGAAGAGGATTTGGGGATCCATGTGTGAGCTTCTATGTTGTTTTATTTGTTGAAGCGATGTTGGAAATGAAATGGATTATGAAAGAATAAGCAGGTGGCAGCGATGCTATTTGGCTGTGCGAGACACAGTAACAAAATGCTGTATAAAATTCATGGGTTGTTGAAAGTAGGAGAGAGAATGACTATACATGGATTGAAATGATCTAAAAAATAGCCACGTAACATTCGCGTGCTATTCGTACGGAAAACGGAAATTGTCTTGCCATTAAGTATTATCTTTTTTGTTTTCCCCCCATATATCTGTACACACTTTCGTTATTTTGGTGTAGTAGTAATTTCGTCTCCCGTTTAAAGAATAATTGCACATGAACAGATGGAGGCTCCCTGTATGTTTATATTGAAAGATACAATGTCATCATGATAATTGCACATGAATTAATGAAGGGTCCGAGTGTGTTTATATTGAAAGAATGAGACACTGCCATTTTTCAACAAAACCCATAGATTAGTCAGTAGAATTTAATTTAAACATACATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	175618	183601	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008033 tRNA processing

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0017150 tRNA dihydrouridine synthase activity

GO:0046872 metal ion binding

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008801.1	PF01207.12	Dus	328	562	1.60E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.604
SRR1783600	control	13.478
SRR1783602	moderate drought stress	11.055
SRR1811619	moderate drought stress	10.939

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.083
DRR006520	Root Summer glycyrrhizin high producing strain	12.564
DRR006521	Root Winter glycyrrhizin high producing strain	12.100
DRR006522	Root Winter glycyrrhizin high producing strain	11.550
DRR006523	Root Summer glycyrrhizin low producing strain	7.190
DRR006524	Root Summer glycyrrhizin low producing strain	6.914
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.651
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.771
SRR2868004	Drought Stress (root)	15.704
SRR2967015	Control (root)	15.808

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.213
SRR9715740	Leaf	14.078
SRR9715741	Leaf	8.456
SRR9715739	Root	5.776
SRR9715742	Root	10.676
SRR9715743	Root	10.595

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.413
SRR8749028	MeJA induced 9h	13.238
SRR8749029	MeJA induced 9h	10.132
SRR8749030	Uninduced	2.887
SRR8749031	Uninduced	1.421
SRR8749032	Uninduced	1.145

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.601
SRR8400027	Control - Root	14.733