Gene detail

Gene detail information of Glyur000089s00008799

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34730.1	1.00E-65	ribosome-binding factor A family protein
NR	XP_007135909.1	1.08E-95	hypothetical protein PHAVU_009G002100g [Phaseolus vulgaris]
COG	NP_484107.1	1.00E-29	ribosome-binding factor A [Nostoc sp. PCC 7120]
Swissprot	tr\|O65693\|RBFA_ARATH	1.00E-88	Probable ribosome-binding factor A, chloroplastic (Precursor)
trEMBL	tr\|V7ATH5\|V7ATH5_PHAVU	4.00E-96	Uncharacterized protein {ECO:0000313\|EMBL:ESW07903.1}

Sequence

Transcript Sequence

>Glyur000089s00008799.1
AAANNANNANGNNNANTTNCAAAGGTNAGAGCAATGACATCACTGCTTCAGGCGGCACTGATATCATCACCTTGTTGGCGATGCAAGCATAGCATCTCGACAACTGCACGCACAACAAGTATGAGTATAACCGCAATGAGCCCAGTTCAGAACCAGAGGCGTGGGGGGTGGGTCCTCACAGTGACGGGGAAGGCGGTTGGCTTTGGTCGGAGTTCAAGTTCAACGATAAGGTGCATGGCGAATCCGAGGAGGGTGAAAATGGTGGCGAAGCAAATAATGAGGGAGCTTTCTGATATGCTCCTCACCGATACGGTGTTGCAGTATGCCATTCTTCCAGAAGCTTCCTTGGGTGCCGACCTTTACCTCTCCTCCCTCGCCACCATCACTGACGTCCAAGTCTCCCCCGATTTGCAGGTGGTTAAGGTGTATGTATCTGTTTTTGGAGATGAAAGAGGGAAGGAAGTAGCCATTGCNGGGTTGAAGTCAAAGACCAAATATGTTCGCAGTGAGCTGGGGAGGCGTATGAAGTTGCGATTAACGCCCGAGATACGCTTTATAGAGGATGAGGCTTTTGAGAGAGGAAGCAGGGTGATTGCAATATTAGATAAAATAAAGAATGAGAAGAGCCCTGGGAGTCAAAACATGGAGCAGTTGGATGCATCAGAGCATGATGACGATGATAGGGATGGTGAAGACCCTGATGAAGGTATCATTTATGTGGAATAGCTACCTCCCAGTGAATCGGTATTGTGCCTNTTTGATATGGGGGGGCCTTTCAGTGTTGGAAGTGCAGGGAATGAGGGAAACACTTCATTGGAATGCTTATCTGGAAAGATGCTGTTCTTGCTAGTAAGTGACGAGATTATCTGAACTTGAAGCCCNGCCTTGGCACGTCAATATATTTTTTTGCCCCAAGTGAAACGGGTAATGTAAATTATGGCGTGTCAATAGATTTGCCAGTAAAATAACAGTTTTTTGGGCTTTCCCCCCATATATTGCATAACCTAGGATGTTAGTATGCCAGAGGACTTGAGTGTACATTTATTTTCTTGCTCTGCCTCTAATTGATTCCTGTAAATGGAATTTCGGTATCGTGAAAGTGTGTACTGTGTCTTGCGTTCCTGGCTTTCCCTCTTGTCACTGTTTACTTGTAAACAGTACTGGCTTGTGATTTGTGNGGAATTGAAATTCCGTTTTAGACTTTTGTGGAGATGTACGGAATGGGAAGCGCACCAAAGCAAGGGTGTTTGTGCCGGAATATGGCCCGGGTGGTGGCGCCATCACCATGCCAATGCCAATGCCAATGATAGAAGAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	161676	165499	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006364 rRNA processing

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008799.1	PF02033.13	RBFA	73	189	4.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.643
SRR1783600	control	7.729
SRR1783602	moderate drought stress	6.965
SRR1811619	moderate drought stress	6.833

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.405
DRR006520	Root Summer glycyrrhizin high producing strain	11.094
DRR006521	Root Winter glycyrrhizin high producing strain	25.814
DRR006522	Root Winter glycyrrhizin high producing strain	25.574
DRR006523	Root Summer glycyrrhizin low producing strain	5.177
DRR006524	Root Summer glycyrrhizin low producing strain	5.126
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.825

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.032
SRR2868004	Drought Stress (root)	8.616
SRR2967015	Control (root)	11.797

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.535
SRR9715740	Leaf	35.912
SRR9715741	Leaf	19.492
SRR9715739	Root	6.745
SRR9715742	Root	7.703
SRR9715743	Root	7.061

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.475
SRR8749028	MeJA induced 9h	10.577
SRR8749029	MeJA induced 9h	9.352
SRR8749030	Uninduced	4.452
SRR8749031	Uninduced	4.479
SRR8749032	Uninduced	4.814

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.811
SRR8400027	Control - Root	22.500