Gene detail

Gene detail information of Glyur000089s00008794

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12770.1	9.00E-67	mitochondrial editing factor 22
NR	XP_003523507.1	0	PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Glycine max]
Swissprot	tr\|Q9LTV8\|PP224_ARATH	8.00E-76	Pentatricopeptide repeat-containing protein At3g12770
trEMBL	tr\|K7KHG1\|K7KHG1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G00910.2}

Sequence

Transcript Sequence

>Glyur000089s00008794.1
ATGCACACCAACGGTGTTCCCTTAGATACCTNCGCTTTGTGCAGCACTTTAACAGCTTCATGCAGAGTTAAAGATGTTAATTTTGGGAAACAGATACATGCCCACATGGGAAAATCAGGCTGGTCTTCTAGTGTGTTTGTGGGTAGTGCTCTAATTGATTTTTACTCAAAATTGTCGAATGTAAAAGATGCAGCGCATGTGTTTGATGAAATNCCTGAGAAGAATACTGTCTGTGTCAATGCACTTTTGTCGGGTTATGGCGAGGCTGGGTTATGGAATCAGGGACTTGAACTGGTTAGGAAGATGCCTGTGATGAAATTGAAGTATGATCAGTTTACATTATCAGCAGCTTTACGTGCATGCACTGGATTATCTGCTGTTGAAATGGGTAGGCAGGTTCATAGTTACTTGCTCCGTACGGCACCCGATGCAGAGAGTGATGTGTATCTGCAGAGCGCGCTGATCGAGATGTATGGCAAGTGTGGCCTGGTAGAGAAGGCTTGCCTGGTTTTCAAGTTGGCTGGAATGGAGATCAGAAAAGAAAGAAGGAGAGACGTTGTGTTATGGACTTCAATGCTTGGTGTGTATGGTAGAAATGGGAATTATAAGGAAGTAATTGATTTGTACAATGAAATGTTGGAGGAAGGAATCAGACCTGATGGANTAGCATTTCTGACAGTAATCTCAGCTTGTGGACACACTGGCCAAGTGCATGCTGGTGTCAAGTATTTTGAGTCTATGGCTAATGATTTCAAGTTAGATCCTGGTCCAGAGCATTACAGCTGCCTAGTTGATTTGCTATGTAGGGCTGGCGAATTGCAGAAGGCATGGGAATTACTAAATGAGACACTCTCTAAGGGAATGGGGAATTGTATCATCTCAATGTGGGGAGCTCTACTCAGTGCTTGTGTGGACCGTGGGGATATAGAGCTGGGAAAATTGGCAGCTCAGAGGGCTCTTGAGTTAGATCCTCAAAATGCTGGAATCTGCATTATGCTATCAAACCTATATGCCCGCTTTGGTATGTGGGATGAGATTGGACGTTTGAGGGTATTGATCAAAGCAAGAGGGTTAAGAAAAGACGCTGGGTGCAGTTGGGTTCAGGTGACAGGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	139994	141109	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008794.1	PF01535.15	PPR	77	103	0.0039
Glyur000089s00008794.1	PF01535.15	PPR	152	172	0.13
Glyur000089s00008794.1	PF13041.1	PPR_2	185	231	1.00E-09
Glyur000089s00008794.1	PF01535.15	PPR	259	287	0.00021

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.984
SRR1783600	control	1.402
SRR1783602	moderate drought stress	0.774
SRR1811619	moderate drought stress	1.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.674
DRR006520	Root Summer glycyrrhizin high producing strain	0.621
DRR006521	Root Winter glycyrrhizin high producing strain	0.700
DRR006522	Root Winter glycyrrhizin high producing strain	0.683
DRR006523	Root Summer glycyrrhizin low producing strain	1.180
DRR006524	Root Summer glycyrrhizin low producing strain	1.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.156
SRR2868004	Drought Stress (root)	0.890
SRR2967015	Control (root)	0.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.891
SRR9715740	Leaf	1.312
SRR9715741	Leaf	0.688
SRR9715739	Root	0.907
SRR9715742	Root	1.026
SRR9715743	Root	1.311

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.545
SRR8749028	MeJA induced 9h	1.361
SRR8749029	MeJA induced 9h	2.001
SRR8749030	Uninduced	0.455
SRR8749031	Uninduced	0.254
SRR8749032	Uninduced	0.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.549
SRR8400027	Control - Root	1.291