Gene detail information of Glyur000089s00008792 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38840.1 | 4.00E-24 | SAUR-like auxin-responsive protein family |
| NR | XP_003534349.2 | 4.88E-81 | PREDICTED: auxin-induced protein 10A5-like [Glycine max] |
| Swissprot | tr|P33080|AX10A_SOYBN | 2.00E-42 | Auxin-induced protein X10A |
| trEMBL | tr|A0A061DYH2|A0A061DYH2_THECC | 5.00E-67 | SAUR-like auxin-responsive protein family {ECO:0000313|EMBL:EOX97814.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 130465 | 137386 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008792.1 | PF02519.9 | Auxin_inducible | 15 | 84 | 3.60E-27 |
| Glyur000089s00008792.1 | PF02519.9 | Auxin_inducible | 106 | 178 | 1.10E-28 |
| Glyur000089s00008792.1 | PF02519.9 | Auxin_inducible | 186 | 278 | 1.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.123 |
| SRR1783600 | control | 1.089 |
| SRR1783602 | moderate drought stress | 2.676 |
| SRR1811619 | moderate drought stress | 2.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.640 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.611 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.694 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.105 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.559 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.284 |
| SRR2868004 | Drought Stress (root) | 6.064 |
| SRR2967015 | Control (root) | 9.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 94.827 |
| SRR9715740 | Leaf | 26.186 |
| SRR9715741 | Leaf | 83.795 |
| SRR9715739 | Root | 4.798 |
| SRR9715742 | Root | 8.881 |
| SRR9715743 | Root | 7.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.729 |
| SRR8749028 | MeJA induced 9h | 27.899 |
| SRR8749029 | MeJA induced 9h | 11.429 |
| SRR8749030 | Uninduced | 24.591 |
| SRR8749031 | Uninduced | 4.489 |
| SRR8749032 | Uninduced | 5.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.435 |
| SRR8400027 | Control - Root | 5.110 |