Gene detail

Gene detail information of Glyur000089s00008790

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38840.1	2.00E-24	SAUR-like auxin-responsive protein family
NR	XP_010030680.1	4.03E-76	PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
Swissprot	tr\|P33080\|AX10A_SOYBN	3.00E-43	Auxin-induced protein X10A
trEMBL	tr\|A0A061DYH2\|A0A061DYH2_THECC	2.00E-52	SAUR-like auxin-responsive protein family {ECO:0000313\|EMBL:EOX97814.1}

Sequence

Transcript Sequence

>Glyur000089s00008790.1
ATGGATTTCAAGAAACTCTTGAAAACTATAAATACACCGCCCTCCTTCACAATCAACACAAGTCATTCACATACTCAAGCATCAAAACCTAGATACAACTTTCTTAAATTTGAGAACTTCAACTTGTTCTCTGAAACATTTGAAATGGGTTTCCGATTACCTGCTATTAGACGGGCTTCCTTTAACAGTAGCCAAGCATCTTCAAAAGCTATGAATGTGCCAAAGGGCCATCTTGCGGTGTACGTTGGAGAGGAAATGAAGCGGTTTGTGATCCCTATGTCATACTTGAACCAACCTTCATTTCAAGACTTGTTGAGTCAAGCAGAGGAAGAATTCGGATATGATCATCCAATGGGTGGTCTTACAATTCCTTGCACAGAAAATGTCTTCTTGCATGGCTATCTTGCAGTGTACATTGGAGAAGAAATGAAGCGGTTTGTGATCCCCATGTCATACTTGAACCAACCTTCATTTCAAGACTTGCTGAGTCAAGCAGAGGAAGAATTTGGATATGATCATCCAATGGGTGGTCTCACAATTCCATGCACGGAAGATGTCTTCTTGCATCATCAAAATTCAAGTTCACTTCTTTCTTCTACTACTTCTTTGAGATCATTGTGCGTGACAAAACAGAACAACAATGGACGATCATCATTTAGTGCAAGTCAAGCATCTAGCAAGGCAGTGGAAGTCCCAAGAGGCTATCTTGCGGTGTACGTTGGAGAGAAAATGAAGAGATTCTTGATTCCAGTATCATTCTTGAACGAGCCTTTGTTTCAAGAATTGCTTCTCCAAGCTGAAGAGGAGTTCGGTTACTGTCATCCAATGGGAGGTCTCACAATTCCCTGCAANGAAGATAAAATGGATTTCAAGAAACTCTTGAAAACTATAAGTACACTATCTTCCTTCACAATCATCACAAGTCATTTGCATACTCAAGCATCAAAACCTATAAACATTCTTCTTAAATTTGAGAACTTTAGCTTGTTTTTCAAAACATCTGAAATGGGTTTCCGCTTACCTGCTATTAGACGGACTTCCTTTACCAGTAGCCACGCATCGTCAAAAGCTGTGAACGTGCCAAAGGGCTATCTTGCAGTATACGTCGGAGAGGAAATGAAGCGGTTTGTGATTCCTGTGACATACTTGAACCAACCATCATTTCAGGACTTGCTCAATCAAGCAGAAGAAGAATTCGGATATGATCATCCAATGGGTGGTCTCACAATTCCTTGCACAGAAGATGCCTTCTTTCATGCGGGGCATGTAATCTCATTCCTCAATGAAAGCCTCCAAGACAGTACCATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	119704	130234	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008790.1	PF02519.9	Auxin_inducible	62	132	8.40E-30
Glyur000089s00008790.1	PF02519.9	Auxin_inducible	133	190	5.40E-25
Glyur000089s00008790.1	PF02519.9	Auxin_inducible	210	296	9.00E-28
Glyur000089s00008790.1	PF02519.9	Auxin_inducible	349	420	1.20E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.758
SRR1783600	control	0.763
SRR1783602	moderate drought stress	1.262
SRR1811619	moderate drought stress	1.229

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.083
DRR006520	Root Summer glycyrrhizin high producing strain	0.154
DRR006521	Root Winter glycyrrhizin high producing strain	0.515
DRR006522	Root Winter glycyrrhizin high producing strain	0.726
DRR006523	Root Summer glycyrrhizin low producing strain	0.644
DRR006524	Root Summer glycyrrhizin low producing strain	0.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.266
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.899

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.436
SRR2868004	Drought Stress (root)	1.929
SRR2967015	Control (root)	1.683

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.085
SRR9715740	Leaf	6.776
SRR9715741	Leaf	12.871
SRR9715739	Root	0.027
SRR9715742	Root	0.182
SRR9715743	Root	0.410

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.113
SRR8749028	MeJA induced 9h	2.046
SRR8749029	MeJA induced 9h	1.367
SRR8749030	Uninduced	2.894
SRR8749031	Uninduced	4.530
SRR8749032	Uninduced	2.247

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.167
SRR8400027	Control - Root	1.909