Gene detail information of Glyur000089s00008787 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38810.2 | 5.00E-135 | Calcium-binding EF-hand family protein |
| NR | XP_003527065.1 | 0 | PREDICTED: uncharacterized protein LOC100787083 [Glycine max] |
| trEMBL | tr|I1K711|I1K711_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G00820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 107912 | 111733 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008787.1 | PF13405.1 | EF-hand_6 | 46 | 68 | 0.00094 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.122 |
| SRR1783600 | control | 5.172 |
| SRR1783602 | moderate drought stress | 7.568 |
| SRR1811619 | moderate drought stress | 7.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.187 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.598 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.114 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.905 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.218 |
| SRR2868004 | Drought Stress (root) | 31.256 |
| SRR2967015 | Control (root) | 27.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 98.170 |
| SRR9715740 | Leaf | 46.337 |
| SRR9715741 | Leaf | 79.979 |
| SRR9715739 | Root | 13.297 |
| SRR9715742 | Root | 52.793 |
| SRR9715743 | Root | 47.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.801 |
| SRR8749028 | MeJA induced 9h | 23.521 |
| SRR8749029 | MeJA induced 9h | 19.437 |
| SRR8749030 | Uninduced | 18.367 |
| SRR8749031 | Uninduced | 20.223 |
| SRR8749032 | Uninduced | 7.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.278 |
| SRR8400027 | Control - Root | 27.078 |