Gene detail information of Glyur000089s00008785.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38800.1 | 4.00E-77 | methylthioadenosine nucleosidase 1 |
| NR | AIT39704.1 | 2.41E-138 | 5'-methylthioadenosine nucleosidase [Robinia pseudoacacia] |
| COG | YP_001984241.1 | 2.00E-19 | putative methylthioadenosine/S-adenosyl homocysteine nucleosidase [Cellvibrio japonicus Ueda107] |
| Swissprot | tr|Q9T0I8|MTN1_ARATH | 3.00E-100 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 |
| trEMBL | tr|A0A097GX12|A0A097GX12_ROBPS | 9.00E-139 | 5'-methylthioadenosine nucleosidase {ECO:0000313|EMBL:AIT39704.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 97476 | 101611 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01244 | MTN | EC:3.2.2.16 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008785.1 | PF01048.15 | PNP_UDP_1 | 29 | 140 | 5.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 95.168 |
| SRR1783600 | control | 95.777 |
| SRR1783602 | moderate drought stress | 71.555 |
| SRR1811619 | moderate drought stress | 70.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 83.746 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 84.646 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 79.983 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 76.425 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.065 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 66.048 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 67.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 107.721 |
| SRR2868004 | Drought Stress (root) | 95.889 |
| SRR2967015 | Control (root) | 95.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 82.271 |
| SRR9715740 | Leaf | 92.872 |
| SRR9715741 | Leaf | 107.670 |
| SRR9715739 | Root | 79.100 |
| SRR9715742 | Root | 81.925 |
| SRR9715743 | Root | 78.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 145.795 |
| SRR8749028 | MeJA induced 9h | 91.309 |
| SRR8749029 | MeJA induced 9h | 110.595 |
| SRR8749030 | Uninduced | 104.755 |
| SRR8749031 | Uninduced | 87.354 |
| SRR8749032 | Uninduced | 71.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 117.877 |
| SRR8400027 | Control - Root | 107.326 |