Gene detail

Gene detail information of Glyur000089s00008784

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21190.1	5.00E-130	ER lumen protein retaining receptor family protein
NR	XP_003522766.1	0	PREDICTED: putative ER lumen protein retaining receptor C28H8.4-like [Glycine max]
Swissprot	tr\|Q8VWI1\|ERD2B_ARATH	4.00E-30	ER lumen protein-retaining receptor B
trEMBL	tr\|I1JSG0\|I1JSG0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G00760.1}

Sequence

Transcript Sequence

>Glyur000089s00008784.1
CTTTTTAATTTATTGTGAGCAGAACCAGAAGTCCATAAATATTGAGGATCTGGGCTGATAGATTCGTATATTTATTCATCGTTGGCGTTAGGGTGGGGAGTGCACTGCAGGGGCTCAAGTTGGAGTTTGAGTTCCGCCCTAATTCACTTCTCCAAACACACAAACATCAACACAGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTATTCCGTCGAAGAAAAATCTGCATTGCAATTTGCAACGCAACAACATTAATTGATAATAAGAAAACAACAACAGTTGGAGTTGAGAGGCGAAGAGGAAGAAGAGGGTGATGAGGGGTGAGAGAAAGTTGATCCACGGCGTCACGACATGGGTGCGGCGACAGCCCCCAAAGGTGAAGGCTTTTCTCGCCGTCGTTTCCGGTATGGTGGCTCTCGTCCTTCTCCGCTTCATTGTCCACGATCACGACAACCTCTTCGTCGCCGCCGAGGCTGTCCACTCCCTCGGAATTTCNGTTCTCATCTACAAGCTCATCAAAGAGAAGACATGCGCCGGATTATCGCTCAAATCCCAGGAATTAACAGCTATGTTTCTAGCTGTTAGGCTCTACTGCAGTTTTGTCATGGAATATGATATACACACCCTACTTGATTTGGCTACTTTGGCAACAACAGTGTGGGTTATATACATGATTCGTTTCAATTTGAAGTCTAGTTACATGGAGGAGAAGGACAACTTTGCAATATACTATGTGGTTATACCCTGTGCTGTGTTAGCCTTGCTTATTCATCCATCAACTTCTCACCATTTATTGAACAGGATTTTCTGGGCATCCTGTGTATATCTGGAAGCTGTGTCGGTACTACCCCAATTGCNTGTCATGCAGAACACCAAAATTGTTGAGCCATTCACAGCACATTATGTATTTGCACTGGGTGTGGCAAGATTCCTGAGCTGTGCTCATTGGGTTCTTCAGGTGTTAGATAGTCGTGGATATTTGTTGGTTGCCTTGGGGCATGGTTTATGGCCGTCAATGGTTCTCATCTCAGAAATTGTCCAGACTTTTATCTTAGCAGATTTCTGTTACTATTACGTCAAAAGTGTTTTTGGGGGACAGCTTGTTCTCCGCCTTCCCTCTGGAGTGGTGTGATTGAGGATTCACTTCAGTGCACATATTGTTGACAAAATCTGCCTCCTTGGAAGAAGCTGATTCTCTGTAAAGTTGAGGGCGATGAAGGGAAAACTAGATATTTATGTTTAGGGTTAGCAGTATTCGTAGTTGGCAATGCTTTTACGCGTAATGTCTCTATTCACTCAGGCTTTTGGAATTCAAGTCAGTATTTATAGAGTATGTCGCTTTTGAAAGGTTTATTTTTACCATACTATTTAGATCAAAGTANTTTTAAATGTTTTGTTTGGCCATCAAAGCCCGAAAATAGTATTTTGAGAGTGAACTTATGTGCTTCATTGCTTATAGAGTCTTGTAAGCAAATGCTTGAACTTTGTATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	94432	97049	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006621 protein retention in ER lumen

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0046923 ER retention sequence binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008784.1	PF00810.13	ER_lumen_recept	72	215	7.80E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.789
SRR1783600	control	10.002
SRR1783602	moderate drought stress	9.352
SRR1811619	moderate drought stress	9.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.431
DRR006520	Root Summer glycyrrhizin high producing strain	16.962
DRR006521	Root Winter glycyrrhizin high producing strain	8.612
DRR006522	Root Winter glycyrrhizin high producing strain	8.449
DRR006523	Root Summer glycyrrhizin low producing strain	22.941
DRR006524	Root Summer glycyrrhizin low producing strain	22.553
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.752
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.035

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.852
SRR2868004	Drought Stress (root)	19.842
SRR2967015	Control (root)	19.898

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.893
SRR9715740	Leaf	6.252
SRR9715741	Leaf	3.572
SRR9715739	Root	9.729
SRR9715742	Root	6.055
SRR9715743	Root	8.401

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.118
SRR8749028	MeJA induced 9h	13.814
SRR8749029	MeJA induced 9h	14.918
SRR8749030	Uninduced	7.561
SRR8749031	Uninduced	5.135
SRR8749032	Uninduced	4.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.801
SRR8400027	Control - Root	18.014