Gene detail

Gene detail information of Glyur000089s00008772

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G34940.1	armadillo repeat only 1
NR	KHN20004.1	Vacuolar protein 8 [Glycine soja]
trEMBL	tr\|I1K701\|I1K701_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G00700.1}

Sequence

Transcript Sequence

>Glyur000089s00008772.1
ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGGCCGATACAAATGGCGNACCAGGTATCGAAGATGGCAGATGAGGCCCAAAATTTCAAGCAGGAATGTCTTGAGTTGAAATCCAAAACAGAGAAGTTGGCGAGTCTCCTCCGCCAAGCTGCGAGGAATAGTAACGATCTTTACGAGCGCCCCACCAGGCGCATCATCGACGACACCGAACAAGTCCTCGATAAAGCCCTCACACTTGTCATTAAATGCCGAGCAAATGGCCTCATCAAGCGACTCTTCACCATCATCCCCGCCACCGCGTTCCGTAAGACCTCCAGTCAGCTCGATAATTCCGTCGGAGACGTCCAGTGGCTTCTCCGAGTCTCCGCATCCGCCGACGAACGCGACGACGAGTACCTTGGCCTTCCCCCCATTGCCTCCAACGAACCCATCCTCTGCCTCATATGGGAACAGGTCGCCATTTTGCTCTCTGGGGGTTCCGTGGATGAACGTTCGGATGCTGCNGCATCCTTGGTTTCGNTGGCTCGCGACAACGACCGCTACGGGAAACTAATCATTGAGGAAGGTGGGGTGCCCCCGCTTCTGAAATTGCTCAAAGAAGGGAAACTGGAGGGTCAAGAGAATGCTGCCAGGGCCATTGGGTTNCTCGGGAGGGATCCCGAGAGTGTGGAGCACATCGTGAATTCCGGTGTTTGTTCTGTCTTTACCAAAATCCTCAAAGAAGGTCACATGAAGGTTCAGACGGTGGTGGCGTGGGCTATTTCGGAGCTTGCCGCACACCACCCCAAGTGCCAGGATCACTTCTCCCAAAACAATGCCATACGCCTGCTCGTCAGCCATCTCGCCTTTGAGACCATTCAAGAGCACAGCAAGTACGCCATTGCCAATAAAAACAAGATGTCTATTCACTCGGTGTTAATGGCCAGCAGCGCATCCAATCCCAACGATCATGAAAAGAAAATTGTGCAAGAAGAAGACGAGAAGATTGCTCACCCAATGGGGAATCAAACACCTAGCCAGATGCACAACGTGGTCACCAACACAATGGCCATTAAGGGAAACCCCAACAACAATACTACAAAGAAGCAACAACAACAGCAACAGCAACAGCAACAGCAACAACACGGCCATGGGAATGGGAACTCGCACGTGTCAATTGCTGGGACAAGCATCAAGGGAAGGGAATTCGAAGATCCATTTACAAAGGCCCAGATGAAGGCCATGGCGGCTAGAGCCCTGTGGCAGCTCTCCAAGGGAAACTTGACAATTTGTCGGAGTATAACAGAATCGAGAGCGCTTTTGTGCTTCGCGGTTTTGTTAGAAAAGGGTCTGGAAGACGTTCAATACTATTCGGCAATGGCCTTGATGGAAATCACCTCTGTGGCAGAGCAACACGCAGAGTTGAGACGTTCTGCTTTCAAGCCCACATCCCCATCCGCCAAGGCCGTCGTGGACCAACTTCTCAAAGTTATTATAAAAGGTGAGGAGTCTGACTTGTTGATACCTTGCGTGAAGGCAATTGGTAACTTGGCGAGGACTTTCAGAGCAACAGAGAAGAGAATCATTGGGCCCTTGGTGAGATTGCTGGACGAAAGAGAACCGGATGTTTCAATGGAAGCCACTATTGCCCTCAAGAAATTTGCGTGTACGGACAACTTTCTCCACGAGAATCACTGCAACGCCATCATAGAGGCAGGAGGGGCAAAGCACTTGATTCAACTGGTTTACTTTGGGGAGCTAATGGTCCAAATCCCTTCCCTCACTCTTCTTTGTTACATAGCGCTACACGTCCCCAAGAACGAGACTCTTGCTCAAGAAGAGGTCCTCATAGTTCTTGAGTGGTGCACTAAGCAGGCGCATCTCATCCACGAGCCATCCATTGAGGCACTCTTACCAGAAGCCAAAAGTAGGTTGGAACTCTATCAATCAAGAGGTACAAGGGGATTCCGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	28327	30279	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008772.1	PF00514.18	Arm	184	216	4.70E-07
Glyur000089s00008772.1	PF00514.18	Arm	219	259	8.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.400
SRR1783600	control	1.359
SRR1783602	moderate drought stress	1.086
SRR1811619	moderate drought stress	1.082

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.586
DRR006520	Root Summer glycyrrhizin high producing strain	2.542
DRR006521	Root Winter glycyrrhizin high producing strain	0.057
DRR006522	Root Winter glycyrrhizin high producing strain	0.056
DRR006523	Root Summer glycyrrhizin low producing strain	0.846
DRR006524	Root Summer glycyrrhizin low producing strain	0.889
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.936
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.803

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.678
SRR2868004	Drought Stress (root)	1.351
SRR2967015	Control (root)	1.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.541
SRR9715740	Leaf	1.055
SRR9715741	Leaf	0.381
SRR9715739	Root	0.554
SRR9715742	Root	1.343
SRR9715743	Root	0.925

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.431
SRR8400027	Control - Root	2.731