Gene detail information of Glyur000089s00008767.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38650.1 | 0 | Glycosyl hydrolase family 10 protein |
| NR | KHN20002.1 | 0 | Endo-1,4-beta-xylanase A [Glycine soja] |
| COG | NP_682692.1 | 3.00E-64 | endo-1,4-beta-xylanase [Thermosynechococcus elongatus BP-1] |
| trEMBL | tr|I1K6Z9|I1K6Z9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G00680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 9570 | 14125 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM22,GH10 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008767.1 | PF00331.15 | Glyco_hydro_10 | 204 | 464 | 6.00E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.158 |
| SRR1783600 | control | 1.140 |
| SRR1783602 | moderate drought stress | 0.770 |
| SRR1811619 | moderate drought stress | 0.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.166 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.176 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.633 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.828 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.882 |
| SRR2868004 | Drought Stress (root) | 0.209 |
| SRR2967015 | Control (root) | 0.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.505 |
| SRR9715740 | Leaf | 0.515 |
| SRR9715741 | Leaf | 0.552 |
| SRR9715739 | Root | 0.652 |
| SRR9715742 | Root | 1.065 |
| SRR9715743 | Root | 0.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.752 |
| SRR8749028 | MeJA induced 9h | 0.044 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.001 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.972 |
| SRR8400027 | Control - Root | 3.832 |