Gene detail information of Glyur000088s00007753.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28530.1 | 0 | FAR1-related sequence 10 |
| NR | XP_003534740.1 | 0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LKR4|FRS10_ARATH | 0 | Putative protein FAR1-RELATED SEQUENCE 10 |
| trEMBL | tr|I1L023|I1L023_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G01540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 353394 | 356372 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007753.1 | PF03101.10 | FAR1 | 28 | 119 | 8.80E-19 |
| Glyur000088s00007753.1 | PF10551.4 | MULE | 262 | 340 | 8.00E-14 |
| Glyur000088s00007753.1 | PF04434.12 | SWIM | 525 | 549 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.763 |
| SRR1783600 | control | 4.804 |
| SRR1783602 | moderate drought stress | 7.941 |
| SRR1811619 | moderate drought stress | 7.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.587 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.481 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.879 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.702 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.608 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.690 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.374 |
| SRR2868004 | Drought Stress (root) | 7.826 |
| SRR2967015 | Control (root) | 7.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.192 |
| SRR9715740 | Leaf | 12.323 |
| SRR9715741 | Leaf | 10.687 |
| SRR9715739 | Root | 0.656 |
| SRR9715742 | Root | 3.094 |
| SRR9715743 | Root | 2.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.267 |
| SRR8749028 | MeJA induced 9h | 9.413 |
| SRR8749029 | MeJA induced 9h | 5.031 |
| SRR8749030 | Uninduced | 7.898 |
| SRR8749031 | Uninduced | 6.833 |
| SRR8749032 | Uninduced | 4.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.229 |
| SRR8400027 | Control - Root | 6.809 |