Gene detail

Gene detail information of Glyur000088s00007741

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50740.1	6.00E-30	Heavy metal transport/detoxification superfamily protein
NR	XP_004486345.1	2.46E-100	PREDICTED: translation initiation factor IF-2-like [Cicer arietinum]
COG	YP_694073.1	7.00E-06	Cu(I)-exporting ATPase [Alcanivorax borkumensis SK2]
trEMBL	tr\|B9IH20\|B9IH20_POPTR	4.00E-91	Copper-binding family protein {ECO:0000313\|EMBL:EEF04885.1}

Sequence

Transcript Sequence

>Glyur000088s00007741.1
TTTATACCCATAAAATTTAACTGGATACCATAGCAATCACCCAAAGGTGATTGCTGAGGTGATTGCTGAGTCAGCCAAGGTGCAACGTATGTCTATATCTGCATTAAAACGGTCCACCTCAGATTTTGCAGAATCCCCACCTCAATTAAATGTGCTCCTCCCCCACCCCTCCCCCCCCTTGCTCCCACCCTCAGACACAGCAAGGAAAGAGAAATAAGAGAGAGAGAGAAACTGATAATTAAGAAGAAGAGGAGCATCAATATATATTATTACTCTACCTGCTGTGTTGCCAGCAAAGTTTCTGAAGCAGAAGGCCATTGTGTGCAGTATCATAGAAATGGGTGAAGAGAACAAGGAAGAAGGAAAGAAAGAAGAAACCACAGAGGAAAAGAAGGAAGAAGAGAAAAAGGATGAGAAGAAGAATGAAGAGCCTCCAGAGATAGTACTCAAGGTTGATATGCATTGTGAAGCCTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTTGAAGGAGTGGAGGAGGTGAGTGCAGATAGCAAGGCGAGCAAAGTGGTAGTGAAAGGGAAGGCAGCAGACCCCATAAAGGTGCGTGAGAGACTACAAAAGAAAAGTGGCAAGAAAGTGGAGCTCATTTCACCTTTGCCTAAACCTCCAGAGGAGAAAAAAGAAGAAATCAAGGAACCGCAGCCAGAGGAGAAAAAGGATGAGCCTCCTCCCGTGGTAACAGTAGTCCTCAAAGTTCGAATGCATTGTGAAGCATGTGCTCAAGTTATACAGAAGCGAATTCGTAAGATTAAAGGAGTAGAATCAGTGGAAACAAACCTGGGGAATGATCAGGTGTGGTTGACCCAGTCAAGCTTGTTGATGACGTGTACAAGAGGACAAAAAAAAGCCTCAATTGTGAAGGAGGAAGAGAAGAAGGAAGAAGAGAAGAAAGAAGAGGAGAAAAAGGAAGAGAAGAAAGAAGAGGAAGAGAAAAAAGAAGGTGAGGAAAGCAAGGGAGAAGAAGATGATAATAAAAGTGACATGATCAAACGCAGTGAATACTGGCCATCAAGATACTCCGTTGATCACTACGTTTATGCTCCTGAGATTTTCAGTGATGAGAACCCAAATGCATGCTCTGTTATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	301970	306354	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007741.1	PF00403.21	HMA	37	91	5.20E-13
Glyur000088s00007741.1	PF00403.21	HMA	132	168	1.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.712
SRR1783600	control	13.931
SRR1783602	moderate drought stress	7.279
SRR1811619	moderate drought stress	7.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.227
DRR006520	Root Summer glycyrrhizin high producing strain	30.917
DRR006521	Root Winter glycyrrhizin high producing strain	0.378
DRR006522	Root Winter glycyrrhizin high producing strain	0.286
DRR006523	Root Summer glycyrrhizin low producing strain	12.854
DRR006524	Root Summer glycyrrhizin low producing strain	13.201
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.090
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.534
SRR2868004	Drought Stress (root)	10.263
SRR2967015	Control (root)	13.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.761
SRR9715740	Leaf	0.275
SRR9715741	Leaf	7.379
SRR9715739	Root	0.507
SRR9715742	Root	2.665
SRR9715743	Root	1.748

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.363
SRR8749028	MeJA induced 9h	0.371
SRR8749029	MeJA induced 9h	2.016
SRR8749030	Uninduced	0.081
SRR8749031	Uninduced	0.166
SRR8749032	Uninduced	0.481

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.256
SRR8400027	Control - Root	29.892