Gene detail information of Glyur000088s00007738 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47650.1 | 3.00E-92 | nudix hydrolase homolog 2 |
| NR | XP_003546200.1 | 0 | PREDICTED: nudix hydrolase 2 isoform X1 [Glycine max] |
| COG | YP_944432.1 | 3.00E-39 | ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37] |
| Swissprot | tr|Q94B74|NUDT2_ARATH | 1.00E-113 | Nudix hydrolase 2 |
| trEMBL | tr|I1MFS0|I1MFS0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G12580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 278977 | 283479 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007738.1 | PF00293.23 | NUDIX | 173 | 293 | 1.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.350 |
| SRR1783600 | control | 3.287 |
| SRR1783602 | moderate drought stress | 3.623 |
| SRR1811619 | moderate drought stress | 3.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.273 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.913 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.743 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.556 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.726 |
| SRR2868004 | Drought Stress (root) | 7.240 |
| SRR2967015 | Control (root) | 5.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.184 |
| SRR9715740 | Leaf | 24.692 |
| SRR9715741 | Leaf | 19.262 |
| SRR9715739 | Root | 0.256 |
| SRR9715742 | Root | 2.917 |
| SRR9715743 | Root | 2.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.964 |
| SRR8749028 | MeJA induced 9h | 8.958 |
| SRR8749029 | MeJA induced 9h | 4.401 |
| SRR8749030 | Uninduced | 9.303 |
| SRR8749031 | Uninduced | 4.863 |
| SRR8749032 | Uninduced | 3.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.470 |
| SRR8400027 | Control - Root | 11.215 |