Gene detail

Gene detail information of Glyur000088s00007737.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47660.1	1.00E-39	Homeodomain-like superfamily protein
NR	XP_007147613.1	1.81E-146	hypothetical protein PHAVU_006G139200g [Phaseolus vulgaris]
Swissprot	tr\|Q39117\|TGT2_ARATH	9.00E-45	Trihelix transcription factor GT-2
trEMBL	tr\|V7BNQ3\|V7BNQ3_PHAVU	7.00E-147	Uncharacterized protein {ECO:0000313\|EMBL:ESW19607.1}

Sequence

Transcript Sequence

>Glyur000088s00007737.1
AGCCATTTTACTTACCAAACCAACNAGTAGTAACCACCGTTCCAAACTTCATTTTCACCTCTTCCCAAAAACCCTCGCGCCGCCATTNTTTTTTCCCCATTTTTTTTACCATAACACACCAACAGTTAACATGGACCTCTTCGCCGCCGACCACGTCGCCCCATTTCCCGATTCCGGCGACCTCCTTTACGCCACCGACCTCCTCTCCCACCGCCACAACCCCCAGAAGCTCCGCCCCATCAGGTCCATCCCCCCCGCCGATTCATCTCACACCCTCGACCCTCCAGAACCTTCCCCCCAGCTGCAGGACCCGCCTGGTTCCGGGTCGGGTCATGCACACTTGCCTCCCGNACAGGATTCTGGCTCGTCTTTGGATAATGATGACGATAATGACGAAGACGAAGATGTTGACAATTCATCAACAAGTACTAAAGAACTTGGCTCCAGAAAGAGAAGGCGAAAGACGGCAAGAAAGCTTGAAGATTTTGTGGAAAGTTTGGTGAAGAAGGTGATGGAAAAGCAAGAGCAGATGCACAAAGAACTAGTGGGGATGATAGAGAACAAGGAAAGGGAAAGACTAAAGAGAGAAGAGGCATGGAAGCATGAGGAAATGGAGAGAATTAGAAAGGATGAAGAAGCAAGAGCCCAAGAGAGGACCCGAAATCTAGCTCTCATATCTTTCATTCAGAACCTATTAGGCCAAGAGATTCAAATCCCTCCTCAACCAGCAGCAGAAGGAAGCAGCAAAAGAGAAGAGGAAAATGAAGTTGAGGTGAACAACAACAACAACCCAAAAGACCCCAACAATAGGTGGCCTGATGTGGAAGTACAAGCACTCATAAACGTGAGAACTTCATTGGACCACAAGTTTCGTTTCATGGGATCCAAAGGGTCAATATGGGATGATATATCTGGGGCAATGCATGGCATGGGGTACAACCGTTCTGCAAAGAAGTGTAAGGAGAAATGGGAGAACATCAACAAGTACTATAAGAGGACTGTGGGGAGTGGCAAGAAACGGCCACAGAATAGCAAGACTTGCCCTTACTTTGATGAGTTGGACATTCTGTATAGAAACGGGCTCCTCAGCCTTGGNAATGCTTTGAACAATACCAATACCAACCATGTTTCCAAGAGTAGTGAAGAAAAGGAGAAGAGTGAAGAAACTTGATAATCATAAGTATGGCTTGCNTGTGTAAAGTTTCTTGCACTCATTTTTATCTAGTCATTTTGCAATTTGAATCACCTCTCTAGTGAACCTTTTTAGACAACANAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	276431	278569	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007737.1	PF13837.1	Myb_DNA-bind_4	226	311	1.90E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.414
SRR1783600	control	6.587
SRR1783602	moderate drought stress	8.370
SRR1811619	moderate drought stress	8.335

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.187
DRR006520	Root Summer glycyrrhizin high producing strain	5.937
DRR006521	Root Winter glycyrrhizin high producing strain	3.932
DRR006522	Root Winter glycyrrhizin high producing strain	3.913
DRR006523	Root Summer glycyrrhizin low producing strain	10.477
DRR006524	Root Summer glycyrrhizin low producing strain	9.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.872
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.906

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.324
SRR2868004	Drought Stress (root)	5.322
SRR2967015	Control (root)	6.715

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.021
SRR9715740	Leaf	1.850
SRR9715741	Leaf	1.118
SRR9715739	Root	0.689
SRR9715742	Root	4.637
SRR9715743	Root	3.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.110
SRR8749028	MeJA induced 9h	11.590
SRR8749029	MeJA induced 9h	13.413
SRR8749030	Uninduced	8.292
SRR8749031	Uninduced	6.523
SRR8749032	Uninduced	5.175

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.776
SRR8400027	Control - Root	7.078