Gene detail

Gene detail information of Glyur000088s00007730

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47710.2	8.00E-66	Calcium-dependent lipid-binding (CaLB domain) family protein
NR	AFK40542.1	4.03E-106	unknown [Lotus japonicus]
Swissprot	tr\|Q8LFN9\|AGD13_ARATH	6.00E-38	Probable ADP-ribosylation factor GTPase-activating protein AGD13
trEMBL	tr\|I3SJV0\|I3SJV0_LOTJA	2.00E-106	Uncharacterized protein {ECO:0000313\|EMBL:AFK40542.1}

Sequence

Transcript Sequence

>Glyur000088s00007730.1
GTTGCCGGTGAATGAGGTTGTTCCATGATCTCTTTAAATTCTGATGCTGATTGCTTATTGCTGATTCATTACTACCACAACAACAACAACAACAACAACAACACAATCATCGAAAACCAACCCACAAGAGACATATCCATAATCCATTGGAGTATAATGACTGAACAATTGGGGCTTCTAAAAGTCATAGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGAGCAGTGATCCATATGTTGTGCTCAAACTAGGGAATCAGACTGCAAAGACCAAGGTCATTAATAGCTGCTTGAATCCTGTTTGGAATGAGGAGCTGAGTTTCACATTGACAGAACCATTGGGAGTTCTGAATTTGGAAGTATTTGATAAAGATCTTTTGAAGGCTGATGACAAGATGGGAAATGCTTTTGTCAACCTGCAACCATTAGTCTCTGCAGCTAGATTAAGAGATATTTTAAGAGTCTCTTCTGGTGAGACAACATTAAGGAAGGTCATACCTGAGAGTGAAAACTGCCTTGTCCGTGAAAGTAGCATCAATTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTAGAATCTGGGGAACTAGAATTGACATTCAAGTTGATCCCTCCTGTTGCTCCCTCAAAATAGTGCAGTAACTGCAAGTGTCCTCAGGGTAGATCTCTAACTAGATCATAATTGTAACATTTTATTCGGGGATGTATCTCGTGAGAGGACATTTTTTTATGTGAGATTGAGAGTAGTAAATATTGACCATATAACTATACATGGATGGTCAAGATTGAAAGTTATTTAATTCACTGTTAGATCTTTTAATGGCCAAAATTTACTCCTCTAACTCTCATGTAAAAAAGGCTCTCTCTCTCTCACTTGATATGTTTCCCATTTTATTATGTAGTTGTCTTGCTTTTGATTAACTGTTTCATAGATGTTTCTACCAAAAAAAAAATACTCTTTCATGGATGTATGCTGCTATGAAACTTAGCAGCTAGTTGGTGATTCCTCATCCCCAGTTTTAGATAAAAGCCACTTGGAGCTGCATTTCCAAAAGAACAAGCTGTGATTTGTGGCTTCTTTGGTCGACTTTATGGTGTGTTGCACTTGTGTTACCTTTGTATTAGAAAATTGAGTGGTTATATTCTTTGGTCGACTTTAGCAACGAGTTCTCATTGGGTATTGCATAGTTTTTGGTGTTATTGTATTGATTTTCAGGTAAGTCAAGAAAAGGAAGTTGTGATGACGCCTGGCTCGTAGANATATACTTCTATTTCTACCTTGTTGGTTACAGATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	231934	234480	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007730.1	PF00168.25	C2	52	130	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.331
SRR1783600	control	0.332
SRR1783602	moderate drought stress	0.411
SRR1811619	moderate drought stress	0.431

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.911
DRR006520	Root Summer glycyrrhizin high producing strain	25.145
DRR006521	Root Winter glycyrrhizin high producing strain	1.013
DRR006522	Root Winter glycyrrhizin high producing strain	0.987
DRR006523	Root Summer glycyrrhizin low producing strain	79.237
DRR006524	Root Summer glycyrrhizin low producing strain	78.359
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.742
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.951

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.795
SRR2868004	Drought Stress (root)	14.311
SRR2967015	Control (root)	17.162

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.136
SRR9715740	Leaf	27.541
SRR9715741	Leaf	35.949
SRR9715739	Root	31.412
SRR9715742	Root	60.565
SRR9715743	Root	53.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.174
SRR8749028	MeJA induced 9h	48.851
SRR8749029	MeJA induced 9h	46.010
SRR8749030	Uninduced	264.710
SRR8749031	Uninduced	39.229
SRR8749032	Uninduced	38.821

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.337
SRR8400027	Control - Root	20.907