Gene detail information of Glyur000088s00007727 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47730.1 | 5.00E-92 | Sec14p-like phosphatidylinositol transfer family protein |
| NR | KDO78592.1 | 9.58E-171 | hypothetical protein CISIN_1g019113mg [Citrus sinensis] |
| Swissprot | tr|F4J7S8|SFH9_ARATH | 3.00E-11 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 |
| trEMBL | tr|A0A067GT31|A0A067GT31_CITSI | 4.00E-171 | Uncharacterized protein {ECO:0000313|EMBL:KDO78592.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 218223 | 223260 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007727.1 | PF03765.10 | CRAL_TRIO_N | 36 | 61 | 1.60E-08 |
| Glyur000088s00007727.1 | PF00650.15 | CRAL_TRIO | 180 | 322 | 1.60E-17 |
| Glyur000088s00007727.2 | PF03765.10 | CRAL_TRIO_N | 35 | 61 | 1.20E-08 |
| Glyur000088s00007727.2 | PF00650.15 | CRAL_TRIO | 88 | 242 | 2.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.113 |
| SRR1783600 | control | 17.218 |
| SRR1783602 | moderate drought stress | 12.881 |
| SRR1811619 | moderate drought stress | 13.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.951 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.175 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.223 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.174 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.232 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.953 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.174 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.178 |
| SRR2868004 | Drought Stress (root) | 14.050 |
| SRR2967015 | Control (root) | 16.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.477 |
| SRR9715740 | Leaf | 5.933 |
| SRR9715741 | Leaf | 5.685 |
| SRR9715739 | Root | 3.980 |
| SRR9715742 | Root | 10.143 |
| SRR9715743 | Root | 8.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.560 |
| SRR8749028 | MeJA induced 9h | 15.304 |
| SRR8749029 | MeJA induced 9h | 10.929 |
| SRR8749030 | Uninduced | 1.629 |
| SRR8749031 | Uninduced | 0.157 |
| SRR8749032 | Uninduced | 0.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.363 |
| SRR8400027 | Control - Root | 27.555 |