Gene detail

Gene detail information of Glyur000088s00007721

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein
NR	KHN40775.1	C2 and GRAM domain-containing protein [Glycine soja]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|I1L056\|I1L056_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G01830.1}

Sequence

Transcript Sequence

>Glyur000088s00007721.1
GTTTTCCCCCAAACCCCTTCAATCACTCATTCAATTAATTTTGAGTCTTTAGGTTCTATCAATGTCTTTCTGATAAGTGATCACGCTCTCTCAAATTTTTTCCTTTTTTTTCCCTTTTTTATTAAATAATATTCNTCTTGCCTGGTTGGTTGACAAATTTTTACTGCTTTCATCTTGTTTCAACTACCCATTACCCATTCATGATTAATTCGTGCAAATAAAAAAACTTTGAACCAATTTTCACATAGATCAGCAGTTTCCACAGCATTTCTTCCTCTTCTTCTTCTGTTCACCGAAGAAATTGAACTTTGTTGACCAGTTGTTCATTCTTTCTACTTCTCAGTGTCCCATTTGTTGTTCAATACCCATTTCCTTCTCCTTCTGCATACACTGCAATACCCTTTTGGAAGATTCTTCTGGGGTGCTCTTTGGTTTTCGGTGTGATAAGAGAAAGTTGTCATTTTGACTTCGATATTCTGGTGCCCTTTTTGAAAAAAAATGAAGCTTGTGGTTCGTGTGATTGAGGCAAAGAACTTGCCTCCGACGGATCCTAATGGGTTGAGTGATCCATATGTGAGGTTACAATTGGGGAGGCAAAGGTTCAAGACAAAGGTGATTAAGAAGAGTCTGAATCCNAAGTGGGATGAAGAGTTTAGCTTTAGGGTGGATGACCTCAATGAAGAGCTGGTTATCTCTGTTATGGATGAGGACAAGTTCTTCAATGATGACTTTGTGGGTCAACTTAAAGTGCCAATCTCACTTGTCTTTGATGAGGAGATCAAATCCCTTGGCACTGCTTGGTACTCTTTGCAACCCAAAAGCAAGAAGTGCAAGAACAAGGAATCTGGCGAGGTTCGTTTGAGCATATATTTTCAACAAAAAAATGCATCCGTGGAGTCAAATGATAAAGGTGATCTAGTGTTTCATCCACGAAAAATTGCTGATTCTATTGCTGAATCGCCTTCAAGGTCTTCCAGTGGATATTCAAGCACATCTTCTCCTGCAAGGGAAGATATTACATCTGCCAAGGATGAAAAATCTGGTACACAGAAAACAATCACAGAAAGAATTGCCCAAATCTTTAATAAGAGCTCTGATATGTCTTCAACCCCATCCCGTAGAAGCATTGACTTGGACCAACCTGAAATTAGTAAAGTGGAAGTTGCTGAGATCAAGACTGCGGATCAGTCCTCTGATGAGACTTTTGAAGAAGCTATGAAAAAATTGCAGTCTGCAGATCAAGGAAGTGAAATTCCTAGCAATTTACCACTAGGGGTGTTTATCGATCAACAATATATCATTGCACCAGAAGACCTGAACAAGATACTATTTTCTCCTGATTCAGATTTTCTCAAGTCATTGGCAGATTTACAGGGTAATACAGAACTGCAAATGGGGCCTTGGAAGTTTGAGAATGGCGGGGATTCCTTGAAAAGATTAATTACNTATGTCAAGGCTCCCAGTAAACTAATTAAAGCTGTCAAAGCCTTTGAGGAACACACATATTTGAAAGCTGATGGGAAGAACTTTGCTGTTCTAGCCAGTGTCAGCACTCCTGATGTTATGTATGGGAGCACCTTTAGGACAGAAGTACTCTATGTGATCACACCTGGACCAGAGTTGCNCTCAGGAGAGCAGTGTTCACGTCTGGTTGTATCATGGCGAATGAATTTCTTACAGAGCACCATGATGAAAGGAATGATCGAAAATGGGGCTCGGCAAGGTATGAAGGAAAGTTTCGATCAGTATGCCAGTTTGTTATCTCAGTCTGTTAAACCTGTTGATCCAAAGGAACTTACTTCCATTAAGGAGCAAGCTTTGGCATCATTACATGCAGAGCCACAGTCAGATTGGAAGCTGGCAGTGCAGTATTTTGCTAACTTCACAGTAGTCTCAACAGTTTTCATGGGGTTGTATGTGCTTGTCCACATATGGCTGGCTGCTCCCAGTACAATTCAAGGGCTCGAGTTTGCTGGGCTTGACTTGCCAGATTCGATTGGCGAATTTGTTGTTTCTGCTGTCCTGGTCCTTCAAGGTGAACGCGTGCTGGGTTTAATCTCACGCTTCATACAAGCCAGAGCACAAAAGGGTAGTGATCATGGAATTAAAGCGCAAGGAGATGGGTGGTTACTAACTGTTGCCTTGATTGAAGGAAGCAATTTAGCTTCTGTTGATTCTAGCGGGTTCTGTGATCCATATGTGGTGTTTACTTGCAATGGGAAAACAAGAACNAGTTCAATCAAGTTCCAGAAATCTAATCCTTTATGGAATGAAATATTTGAGTTTGATGCAATGGATGATCCTCCTTCTGTGCTGGATGTGGAAGTTTATGATTTTGATGGGCCTTTTGATGAAGCTGCGTCTCTAGGGCATGCTGAAATTAATTTTCTAANAGCAAACATCTCAGATCTTGCTGATGTATGGGTTCCTCTTGAAGGAAAGTTGGCTTTGGCATGTCAGTCTAAGCTGCATTTAAGAATTTTCTTGGACAACACTAAAGGTGGCAATGTAGCAAAAGACTATTTAAGCAAAATGGAGAAAGAGGTTGGGAAGAAGATAAATTTGCGGTCTCCTCAAACAAATTCGGCATTCCAGAAACTCTTTGGGCTTCCNCCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAAGAAAAATGCCCCTGCAGGGCCGCCTATTTCTATCAGCAAGAATAATTGGATTTCATGCAAATTTGTTTGGGAATAAGACAAAATTCTTTTTTCTTTGGGAGGATATTGAAGACATTCAGGTCGTTCCTCCTACATTTTCATCAATGGGGAGTCCAATAATTGTCATAACTCTTCGGCCGGGTAGAGGTGTGGATGCAAGGCATGGTGCAAAAACACAAGATGCACAAGGCAGGCTGAAGTTCCATTTCCAGTCCTTTGTATCTTTCAGTGTTGCACACAGGACTATTTTGGCTCTCTGGAAGGCCAGATCCTTGAGTCCTGAACAGAAGGTCAAGTTTGTAGAAGAGGAATCTGATACCAAAAGCATTATGAGCGATGAAAGTGGCTCATTCCTTGGCCTGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTCCAATTCCTGCCAGTTTCCTCATGGAGTTATTTAGTGGGGGTGAGTTGGACCGCCGGGTCATGGAAAAGTCTGGTTGTCTTAATTACTCTTATACCCCTTGGGTATCAGAGAACAATGATATCTCTGAGAGGGCAGTGTATTACAAATTTGAGAAGCACATTTCCAGTTATAGAGGTGAAGTGACAAGTACTCAGCAAAAATCTCCCCTTCTGGATGGAAAGGGTTGGCTTGTGGAAGAGGTTTTGAATCTTCATGGTGTTCCCCTTGGTGATTATTTCAGTATACACCTTCGCTACCAAATAGAGGATATGCCCCCAAAAGCGAAGGGATGTAGAGTGCAAGTATTATTTGGAGTTGAGTGGCTGAAAAGCACAAAGAATCAGAAAAGGATCACAAAGAACATCCAACAGAATCTGCAGGAACGTCTTAAGCTGACCTTTAGTCTAGCTGAGAAGGAGCTTTTACNGAAATAGCAGTTGAATTTTCCTGGATCCGACGTAACCATGGGAGCTAGCTGATATTCTGTCAGCACAAATGTTGCTCCCATTCGCGGGCTCGGCCTGGAATACATAAAGGTTCATGTGATTGTNCTGTTTGGGTTTGGATTGCATGACAATCCCAACTTCATTCAATATCAGTGGAACAAACCTGCTAGTGGGNAACTTTGACCAGAGCTATACTGATNCTGAAAGTTTGTGCTCTTTGGTTAANTTGCTACCAAGTTTGTTCATAAAACCAGGTTACTGATAGGAGAGGTTACCTGGCAGAAGATACTCACTCAGATTGCAATAGCAGCAGTTGCTAACACTGGCAGTTCAAATTTTTGGCTTGTTGTGTACAGTGGACATCTTATTACAAAAGGGTCAGCAACAACATGTGTACTCATAATTGTTAGAAGCTGTGACAATTGACACAGTGGTGATGAAGAAATGTTTTTTTGTCAAATAGTAAATGTTTGTAAACCAT

Protein Sequence

>Glyur000088s00007721.1
MKLVVRVIEAKNLPPTDPNGLSDPYVRLQLGRQRFKTKVIKKSLNPKWDEEFSFRVDDLNEELVISVMDEDKFFNDDFVGQLKVPISLVFDEEIKSLGTAWYSLQPKSKKCKNKESGEVRLSIYFQQKNASVESNDKGDLVFHPRKIADSIAESPSRSSSGYSSTSSPAREDITSAKDEKSGTQKTITERIAQIFNKSSDMSSTPSRRSIDLDQPEISKVEVAEIKTADQSSDETFEEAMKKLQSADQGSEIPSNLPLGVFIDQQYIIAPEDLNKILFSPDSDFLKSLADLQGNTELQMGPWKFENGGDSLKRLITYVKAPSKLIKAVKAFEEHTYLKADGKNFAVLASVSTPDVMYGSTFRTEVLYVITPGPELXSGEQCSRLVVSWRMNFLQSTMMKGMIENGARQGMKESFDQYASLLSQSVKPVDPKELTSIKEQALASLHAEPQSDWKLAVQYFANFTVVSTVFMGLYVLVHIWLAAPSTIQGLEFAGLDLPDSIGEFVVSAVLVLQGERVLGLISRFIQARAQKGSDHGIKAQGDGWLLTVALIEGSNLASVDSSGFCDPYVVFTCNGKTRTSSIKFQKSNPLWNEIFEFDAMDDPPSVLDVEVYDFDGPFDEAASLGHAEINFLXANISDLADVWVPLEGKLALACQSKLHLRIFLDNTKGGNVAKDYLSKMEKEVGKKINLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMPLQGRLFLSARIIGFHANLFGNKTKFFFLWEDIEDIQVVPPTFSSMGSPIIVITLRPGRGVDARHGAKTQDAQGRLKFHFQSFVSFSVAHRTILALWKARSLSPEQKVKFVEEESDTKSIMSDESGSFLGLDDVSMSEIYSCSLPIPASFLMELFSGGELDRRVMEKSGCLNYSYTPWVSENNDISERAVYYKFEKHISSYRGEVTSTQQKSPLLDGKGWLVEEVLNLHGVPLGDYFSIHLRYQIEDMPPKAKGCRVQVLFGVEWLKSTKNQKRITKNIQQNLQERLKLTFSLAEKELLXK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	166657	172668	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007721.1	PF00168.25	C2	3	82	1.20E-26
Glyur000088s00007721.1	PF00168.25	C2	545	617	2.90E-14
Glyur000088s00007721.1	PF02893.15	GRAM	697	759	1.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.071
SRR1783600	control	4.009
SRR1783602	moderate drought stress	3.375
SRR1811619	moderate drought stress	3.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.977
DRR006520	Root Summer glycyrrhizin high producing strain	6.825
DRR006521	Root Winter glycyrrhizin high producing strain	2.858
DRR006522	Root Winter glycyrrhizin high producing strain	2.761
DRR006523	Root Summer glycyrrhizin low producing strain	10.911
DRR006524	Root Summer glycyrrhizin low producing strain	10.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.142
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.110

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.218
SRR2868004	Drought Stress (root)	20.842
SRR2967015	Control (root)	18.586

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.169
SRR9715740	Leaf	18.888
SRR9715741	Leaf	33.023
SRR9715739	Root	9.903
SRR9715742	Root	34.270
SRR9715743	Root	30.978

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.929
SRR8749028	MeJA induced 9h	18.239
SRR8749029	MeJA induced 9h	9.793
SRR8749030	Uninduced	22.054
SRR8749031	Uninduced	19.350
SRR8749032	Uninduced	10.861

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.295
SRR8400027	Control - Root	18.875