Gene detail information of Glyur000088s00007718 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47800.1 | 2.00E-176 | Phototropic-responsive NPH3 family protein |
| NR | XP_003547299.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At5g47800-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FIK1|Y5780_ARATH | 0 | BTB/POZ domain-containing protein At5g47800 |
| trEMBL | tr|K7MAX8|K7MAX8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G12815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 150100 | 154115 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007718.1 | PF03000.9 | NPH3 | 191 | 447 | 4.40E-78 |
| Glyur000088s00007718.2 | PF03000.9 | NPH3 | 191 | 447 | 4.40E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.981 |
| SRR1783600 | control | 1.044 |
| SRR1783602 | moderate drought stress | 3.975 |
| SRR1811619 | moderate drought stress | 3.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.687 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.514 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.926 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.935 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.413 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.332 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.289 |
| SRR2868004 | Drought Stress (root) | 12.790 |
| SRR2967015 | Control (root) | 17.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.732 |
| SRR9715740 | Leaf | 3.024 |
| SRR9715741 | Leaf | 5.848 |
| SRR9715739 | Root | 0.018 |
| SRR9715742 | Root | 1.615 |
| SRR9715743 | Root | 1.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.172 |
| SRR8749028 | MeJA induced 9h | 0.272 |
| SRR8749029 | MeJA induced 9h | 0.104 |
| SRR8749030 | Uninduced | 1.145 |
| SRR8749031 | Uninduced | 0.243 |
| SRR8749032 | Uninduced | 0.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.083 |
| SRR8400027 | Control - Root | 3.796 |