Gene detail

Gene detail information of Glyur000088s00007713

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55790.1	2.00E-47	Domain of unknown function (DUF2431)
NR	XP_006586798.1	9.38E-136	PREDICTED: uncharacterized protein At4g26485-like isoform X2 [Glycine max]
Swissprot	tr\|P0C8L4\|Y4648_ARATH	4.00E-60	Uncharacterized protein At4g26485
trEMBL	tr\|I1L063\|I1L063_SOYBN	4.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G01890.1}

Sequence

Transcript Sequence

>Glyur000088s00007713.1
AGCGCTTTAGCGGGATAATCAGAGGGACGCTCCATAATAAAGGTGTTCCCTCTTTTTTTTCATAGGTAATGATTGGTCAATAGGGTCGGTAGTGGAAATCATTTAGACAAGACTAGAGGAGACCAATGCATTATTATTGATAAATAAAAATGGGTACAATAATAAAAGATGATCATGATCATGAACTTGACACTTATGATGAACAAGAGTCAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCAACAAAGGCAGAGAAATGGAAGAAGCACTACTCATCGAGGCACACGATACTCCTTGTTGGAGAGGGTGACTTCTCTTTCGCCCTTTGTTTGGCAAGAGCTTTCGGTTCTGCACACAACCTCGTNGCCACTTCCCTTGATTCCCAAGATAACATTGAAAAGAAGTACAGTAATGGAATAAGTAATGTGAGGGAGCTTGAAGAAAGGGGTTGCATTGTCCTTTACGGTGTTGATGTTAAGGAGATGAGCCANCACTTCTTTCTCAAGACTCAGAGGTTCGATCGCATTGTCTATAACTTCCCTCATGTTGGCTTCCTTTACCCTGAGAATAGCCACTGCCAGATCCAGTTGAACAAAAGGTTGGTGAAGGGATATTTGGCAAATGCCAAAGCTCTAGTGAAGAAAGAGGGAGGGGAGATTCATGTAACACACAAAGAGGGTGATCCATACAACAGATGGGATCTGGTAAAGAAGGCAGAAAAGAAAGGGCTGTTGTTGCACCAAGCTGTGCCATTCTTCAAGGATGACTATCCTGGTTATGACAACAAGAGAGCTCATGGAAAATTATCTGATGAATCTTTCCCAGTTGGGGAAGCTAATACTTACAAGTTCAAGCTCCAAACATCTCTCTAATTCATAATAACTGGATGGGAGTTCTAAGTGTTGGGTTTCATTTGGAAGATCAAAGTTATTTTTAAAGACCTCCTCTCCCCCTAAACTTCTATGTACCAAGNAAAGAGATATCGGTTTATCTGTATTAGAGAAAGAATGAAAAAGATGGGATTTTACTGATGAGATCTCTTTTTANGCCTTAACAATGAAGTTTTTCCTTTTTGCTGTGTACAGTTTTTGTTTACTCTCTATTTTTGTTATGTCCATGAAGTGTTCAAGTGTAGGACTAATTTCTAATCAGGCCACTTGATTAATATACTCAAAAGGAGTATAACAAATTACCTAATCCAAACTATACATAGATGATTAATCACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	131425	133217	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007713.1	PF10354.4	DUF2431	55	221	1.30E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.162
SRR1783600	control	40.397
SRR1783602	moderate drought stress	36.265
SRR1811619	moderate drought stress	36.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.114
DRR006520	Root Summer glycyrrhizin high producing strain	46.441
DRR006521	Root Winter glycyrrhizin high producing strain	33.525
DRR006522	Root Winter glycyrrhizin high producing strain	32.349
DRR006523	Root Summer glycyrrhizin low producing strain	37.037
DRR006524	Root Summer glycyrrhizin low producing strain	36.633
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.925
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.865

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.133
SRR2868004	Drought Stress (root)	15.506
SRR2967015	Control (root)	19.580

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.871
SRR9715740	Leaf	3.364
SRR9715741	Leaf	2.082
SRR9715739	Root	6.742
SRR9715742	Root	9.800
SRR9715743	Root	11.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.333
SRR8749028	MeJA induced 9h	0.806
SRR8749029	MeJA induced 9h	1.216
SRR8749030	Uninduced	0.461
SRR8749031	Uninduced	0.121
SRR8749032	Uninduced	0.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.414
SRR8400027	Control - Root	52.578