Gene detail

Gene detail information of Glyur000088s00007710.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17180.1	0	O-Glycosyl hydrolases family 17 protein
NR	KHN14405.1	0	Glucan endo-1,3-beta-glucosidase 5 [Glycine soja]
Swissprot	tr\|Q9M088\|E135_ARATH	8.00E-168	Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBL	tr\|V7BR90\|V7BR90_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19565.1}

Sequence

Transcript Sequence

>Glyur000088s00007710.1
GGCTATTTTGGTAAATTCGTACCCATCCNGCTCAATAATAACCTGAGCTCTCTCGTTCGTTCACTCCCTACTAATATCTTGAGCTATACTCATTTGTTAAGATCAAAAAGTGTGACAGAGATAGTGATAGCTCTTCCCCTTTTGTAATTGTTGGTTCCTCTGCTTCCAACTCCCAACACACTGAGAGAGAGACCCCTCAATTCAAAATCTCTCCTTTATTACCACTACTATCAGCAGCATTTTCCCATGTTGGAGCCCAGATTCAGTGGTGTCCTTTTCCTGTGCTTGTGGGGCTTGGTGGTTGTTCCCATGGCGGAATCAGCCATAGGGGTAAACTGGGGCACCATATCTTCCCACAGGTTGAAGCCTTCCACGGTGGTTGATCTCCTGAGAAACAACAAGATCCAAAAAGTGAAGCTTTTTGAGGCAGATTCTGATGCGATGAGGGCACTCATGGGGAGTGGCATTCAGGTCATGGTTGGGATCCCCAATGAGATGTTGCAACTCTTGAGCTCTTCCCCTTCTGCTTCTGATTTGTGGGTTCGCCAGAATGTTTCTGCTTACATTGGTAAAGGCGGTGCTGACATCAGGTATGTTGCTGTTGGGAATGAACCCTTCCTTTCAAGTTACAATGGTCAATTTCAGAACTTAGTCATGCCCNCGATAACCAATATACAACAGTCTTTAGTCAAAGCAAATCTTGCTGGTTATGTAAAGATAGTTGTCCCTTGCAATGCAGATGCCTATGAGTCCCCAGGAGGACTTCCTTCCCAAGGGGCGTTCCGGCCTGAACTGACCCAAATCATGACTCAACTGGTTCAGTTCCTCAACTCAAATGGATCCCCGTTCATTGTTAATATCTACCCATTTCTTAGTCTCTATGGCAATGNAGATTTCCCCCAAGAGTACGCATTCTTCGAGGGAACTACTCATCCTGTAACAGATGGTTCTAATGTTTACACCAATGCATTTGATGGAAACTACGACACTTTGGTAGCAGCTCTCAGTAAACTTGGATATGGTCAGATGCCTATAGTTATCGGTGAAATCGGTTGGCCCTCGGATGGAGCCGTTGGTGCAAACATCACTGCTGCAAGGGTTTTCAACCAAGGCCTCATCTATCACATTGCAAGTAACAAAGGGACCCCCTTGAGGCCAGGTGCTCCTCCTATGGATGTATATCTTTTCAGTCTGCTTGATGAAGGGGCTAAGAGCACACTTCCAGGGAACTTTGAAAGGCACTGGGGGATATTCTCCTTTGACGGGCAGGCTAAGTATGCATTAAACCTTGGGCTTGGAAACAAGGAGTTGAAAAATGCAAAGAATGTTCAGTATCTTCCATCCAGATGGTGTGTGGCAAACCCCTCCAGTGATTTGGCTAATGTGGTAAACCATATGAAACTTGCCTGTAGTGTTGCAGACTGCACTACGCTTAACTATGGAGGTTCATGTAATGGAATTGGTGAGAAGGGTAATATATCATATGCTTTTAACAGTTACTATCAGCTAAACATGCAGAATTCAGTAAGCTGCGATTTTGATGGGCTTGGTATGGTTACTTTCCTAGACCCTTCAGTTGGCGATTGTCATTTTCTTGTGGGCGTTAGAGATAAAGGCTTGGATTCATCTACTACATCTCAAACAACCCATCAGTGGTGGGTTCTGGTATTACTTCTAATTTTGCATGGCACTTTTTTGCTTTGAATGTGATTAGGAGGTTTCATTNGTGGGTTTTTCATGGTCCCCCCTTCTGAGACTGCTAGAACTAGAATAGCTTGTATACTGTTTTAAGCTTAGAAATATTCAATAGATTCATGGTTTGTAGCCCAGAATATGATTTAAGTCATTGTATCATATAAGAGACTGTATAAACANTATCAGGGATGTATCGAATATTGCACATATTTATTTCGTGTTTGTGGTTTGCATTTCTAGCACAAGCATGGTTTTGTGGAATCATTTTTTATTGCAGTTCTAAGGACTAGTTTTTTAAGTTAATGACTTCACCAACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	126472	129479	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007710.1	PF00332.13	Glyco_hydro_17	27	347	3.70E-73
Glyur000088s00007710.1	PF07983.8	X8	368	436	9.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.511
SRR1783600	control	14.752
SRR1783602	moderate drought stress	11.940
SRR1811619	moderate drought stress	11.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.257
DRR006520	Root Summer glycyrrhizin high producing strain	19.102
DRR006521	Root Winter glycyrrhizin high producing strain	27.877
DRR006522	Root Winter glycyrrhizin high producing strain	26.864
DRR006523	Root Summer glycyrrhizin low producing strain	7.511
DRR006524	Root Summer glycyrrhizin low producing strain	7.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.275
SRR2868004	Drought Stress (root)	6.295
SRR2967015	Control (root)	9.366

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.250
SRR9715740	Leaf	1.644
SRR9715741	Leaf	0.917
SRR9715739	Root	12.544
SRR9715742	Root	10.844
SRR9715743	Root	10.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.669
SRR8749028	MeJA induced 9h	1.592
SRR8749029	MeJA induced 9h	0.511
SRR8749030	Uninduced	0.743
SRR8749031	Uninduced	1.478
SRR8749032	Uninduced	0.904

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.272
SRR8400027	Control - Root	18.366