Gene detail

Gene detail information of Glyur000088s00007696.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47780.1	0	galacturonosyltransferase 4
NR	XP_003535002.1	0	PREDICTED: probable galacturonosyltransferase 4-like isoform 1 [Glycine max]
COG	YP_005353111.1	5.00E-07	glycosyl transferase, family 8 [Pediococcus claussenii ATCC BAA-344]
Swissprot	tr\|Q93ZX7\|GAUT4_ARATH	0	Probable galacturonosyltransferase 4
trEMBL	tr\|I1L071\|I1L071_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G01980.1}

Sequence

Transcript Sequence

>Glyur000088s00007696.1
GACGACAGACTCGATTTCTTTTCTTCTCTCTCTTCCCCATTCCTCGTTCATTGGTTTGGTTCCTCCTGTTATCTTCATCTTCTTCTCTCTTCCTCTGTTCCTGAGCGTTCATCATTTTTCAGCAAAGGGGTACAAACCAATAAAGAAAAACTGCAGTTTTTGANGAACGGGTCTTATTGGTTTCTTCCCATTTTGTACACACACTCACAAAACCCAACCCAACACAACACAACACACCATCTTTCTCTGTTTTCGATCCCAGATTGCGTTTTCCTCTCTCAATGTAACTGCTTCAGATTCCCTCTTCCTTAACGCTTGTGCCTAAAGCTGAAAACTCTGCACTTGGGGATAGGAAATTTCCAACACACCCACANGAAAAAGATAAAGTGGGTCTTCTTTTTTGCTCGGAAAGTTTCTTTCTTGGCCTCAATTTCTCTCAGGATCTGTGCGGTTCCCAAAAGGGTTCTTGTGAGAGTAGAAATATGGTGGCGGTGAGAAACATTGTGCTGTTGTTGCTGTGCATTACTGTTGTTGCTCCGATTGTGCTCTACACTGATCGTCTTGGCACCTTTGAGTCTCCCTCCACCAAGCAAGAGTTTATTGAAGATGTTACTGCTTTTGCTTTCAGTGCAGCAGACTCTAGCCACTTGAATCTACTGCCCCAGGAAACTTCAACAGCCCTTAAAGAACCTATTGGGGTTGTGTATACGGTTGACTCAACTAACACAGAGAATTTGCCTCAAGGCTTGCAATTGGTGGAATCAAGGGAGAGTGTATCTGCCCGGGTATTGTCAACCACAACTGAGGAAGATCAAACTAAAAAGGAGAACCCCATCAAACTGGTGACAGATGGAAATAAGCAAGGAAATCAAGGCNGAAGCAGCACCTTGGAGAAAGCTGATGCAACTGGTGAAAATGTAAATGGGGAAGATGCTATTGATGTTGATGACAGTGATGTGAAACTCACTAAATCAACTCATGCTTCTACTCANGATCCTCAACTTAAGGATGCCAAGCAGAAGCAACAACAAGCAGCAGAAACTTCTAGCAAAATAAACAAGAAAGAACCCGTATTATCTGAAACTAAAAAGCGAAATGACCAAATGCCATCAGATGCTCGGGTACAGCAACTGAAAGATCAGCTTATCCAAGCTAAGGTCTATCTTTCCCTTCCAGTGGTAAAAAGCAACCCCCATCTCACTCGGGAGATTCGTTTACGGGTAAAAGAAGTTTCACGAACACTTGGGGATGCAAGCAAAGATTCTGATTTACCTAAGAGTGCAAATGAGAGAATGAAGGCAATGGAACAAACATTGATGAAAGGAAAGCAAATGCAAGATGATTGTGCTGCTGTTGTGAAGAAGCTTCGGGCTATGATCCATTCAACGGAGGAGCAGCTTCATGCACTCAAGAAGCAGACTTTGTTCTTAACACAATTGACAGCAAAAACACTGCCCAAAGGTCTTCATTGTTTTCCATTACGCCTTACAACTGAGTATTATAACCTGAATTCTTCTCAGCAACAGTTCCCCAATCAAGAGAANTTAGAAGACCCACAACTATACCATTATGCAATATTTTCAGACAACATATTGGCAACAACTGTTGTTGTGAACTCAACCGTTACCAATGCTAAGGATGCCTCGAAACATGTTTTCCACATTGTTACCGATAGGCTCAATTATGCGGCAATGAGGATGTGGTTTTTGGTGAATCCACCAGGCAAGGCAACCATTCAAGTTCAGAACATTGAAGACTTTACATGGTTGAATTCAAGTTANAGTCCTGTCCTAAAGCAGTTGGCTTCCCCAGCTATGATAGACTATTACTTCAAGGCTCATCGAGCAACTTCTGATTCAAACCTGAAGTTCCGGAACCCGAAGTATTTATCTATCTTGAACCACCTCCGCTTCTACCTGCCTGAGATCTTTCCAAAGCTCAACAAAGTGCTGTTCTTGGATGATGATATAGTTGTGCAGAGGGATCTGACCGGTCTTTGGTCAGTCGATCTGAAAGGCAACGTGAACGGAGCTGTAGAAACCTGTGGAGAAANCTTCCACCGGTTCGACCGCTATCTCAACTTCTCAAATCCTCTCATTGCGAAGAACTTCGACCCACATGCTTGTGGGTGGGCATATGGTATGAATGTATTTGATTTAGTGGAATGGAAGAGGCAAAACATCACAGAGGTGTACCACAACTGGCAAAATCTGAATCATGATAGACAACTGTGGAAGTTAGGGACACTGCCACCGGGTCTGATAACATTCTGGAAGCGCACTTTCCCGCTGAACCGGTCGTGGCACGTGTTGGGTCTCGGCTACAATCCCAATGTAAACCAAAAAGACATTGAGAGGTCTGCTGTTATACACTACAATGGGAACATGAAGCCATGGCTTGAGATAAGCATTCCAAAGTTCCGGGGTTATTGGACAAAGTATGTCAACTATGATCACCTCTATTTGCGAGAATGCAACATCAATCCATAGTAATTTTGTGGTGGTAGGAAATTCTAAACTGTGTAGTGTATGTAGGGCTTCTGTTTTTTTTTTTTATATATAAAAAAAAGCTTTACAATTCTTTTTGTATACGTTTCATATTGGTAATTTTTTGGATCAGAAATGCTAACTGTACTTGTAAATGAAATGAAGAGGCTAGTTTCTTTTTCTCTCCCTCCTTTTTAAAAGGCTTACAAGTTGTTCAATGTAATCAATCACCACAAGANTTAGCTACACCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	60074	64660	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007696.1	PF01501.15	Glyco_transf_8	339	641	2.10E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.430
SRR1783600	control	14.474
SRR1783602	moderate drought stress	9.847
SRR1811619	moderate drought stress	9.710

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.665
DRR006520	Root Summer glycyrrhizin high producing strain	17.489
DRR006521	Root Winter glycyrrhizin high producing strain	4.106
DRR006522	Root Winter glycyrrhizin high producing strain	3.967
DRR006523	Root Summer glycyrrhizin low producing strain	17.060
DRR006524	Root Summer glycyrrhizin low producing strain	17.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.982
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.875

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.330
SRR2868004	Drought Stress (root)	15.889
SRR2967015	Control (root)	16.030

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.860
SRR9715740	Leaf	20.037
SRR9715741	Leaf	13.563
SRR9715739	Root	4.008
SRR9715742	Root	23.644
SRR9715743	Root	18.682

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.910
SRR8749028	MeJA induced 9h	24.758
SRR8749029	MeJA induced 9h	18.677
SRR8749030	Uninduced	11.105
SRR8749031	Uninduced	10.628
SRR8749032	Uninduced	7.845

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.372
SRR8400027	Control - Root	22.343