Gene detail

Gene detail information of Glyur000088s00007692

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24120.1	9.00E-51	Homeodomain-like superfamily protein
NR	XP_004486388.1	0	PREDICTED: uncharacterized protein LOC101503318 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SAK5\|APL_ARATH	2.00E-45	Myb family transcription factor APL
trEMBL	tr\|I1L075\|I1L075_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G02030.1}

Sequence

Transcript Sequence

>Glyur000088s00007692.1
AAAGAAGAGAAAAAAGTGGTGAATGGATTCATTAGCAGTGGGAGTGCTGAGTGTATAAACGCGAATTCCATGCCTTTCCTCACTCAATCCACATCCCACTGACTCCATTTGCACCCCTAAGAAAAGGACAGGATGACGTAGACACAAATGAAAGTGAGAGACAGCAACAACAACAACAACCATAATAATAATAAATAGTAACAGACACAGAGCTAGAGTAAGTAACAGAGACAATAACCCTTAAAAATTTGGTCTTTTTTTTTAGCTTTTCTCTTTGTTCACGAAAAAGAGCAGAAAGGGACAAGATCCCCGAAAGGCGTGCCATCGTCAGAGTCAGTTTCATTCGTACGGTGTAATTCNGTTTCATCGTCACCCACCTCTTTTTCACCCCCCAGAAAAAGTTTGCTCCTTTCCCCCTTCTGATTCTCAGTCAAATGGGGTAATACTAGTAGTGACTTCAACTTGGATTGGATCTGATTGAAGAAAAGTTGCTACCTTTCATTTCTGGGGTTGTTGGGTTTTCCCCCATTTTGAAGTAGAAGAAGCAGAAGGATGTATCATCCGAGACTGATACACCCCCATGAAGGGATTGAAGATATGCAGGGTGGTGGGGGTGTCTCTAACCACAAGGGTGACCCTTGTCTAGTTTTGACGGCTGATCCAAAACCTCGCCTTCGTTGGACTCAAGACCTCCATGAACGCTTTGTTGATGCTGTCACCCAGCTTGGGGGTGCCAGTAAAGCGACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATATAGACTTGGTAAGCAATCAGGGAAAGATATGGGTGAGGGATGCAAAGATGGAATATCAGGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACTCTTCTCCTAAGTTGCCAACTTCTGATACAAANGAGGGTTATGAAATCAAGGAGGCGTTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTACAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCNGAGCGAAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATAGGTGCTACAGTGATAGACACGGACAACCAAAAGTTCCAAGGGATCGAAAGTAAAGCNCCAAGAGGAGGTTCCTTGGTCGACCCTCTTGGTTTATACTCCTTGCCATCCACTGAGGTGGCCAGAGTGAATGTCCCGGAAGAAGAAATACCTCCCGGCCTCCAACCCCAAAGGGCTGATTGTTCAACTGAGAGTTGTTTAACCTCACATGAGAGCTCTGGAGGATTGGCTTTGGAAGGATCTCCAGGTGGTGGGAAAAGGAGGATGCTGGGCATGGACTCTATGGCAGCACCTTTGATCTGGAGTGAAGCCAAGATGAAAACTCAAGCCATCAATGTAGCACAAGGTAATAACCCTCTTGGAATAACTAGGTATGGCATGTAAGGCATGGAAGGTCTACTTGATGGTTCATCCTTTAGTATGTTAGTGGGGGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	37520	41808	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007692.1	PF00249.26	Myb_DNA-binding	40	91	1.40E-18
Glyur000088s00007692.1	PF14379.1	Myb_CC_LHEQLE	134	182	2.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.920
SRR1783600	control	35.204
SRR1783602	moderate drought stress	31.599
SRR1811619	moderate drought stress	31.271

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.587
DRR006520	Root Summer glycyrrhizin high producing strain	31.871
DRR006521	Root Winter glycyrrhizin high producing strain	4.798
DRR006522	Root Winter glycyrrhizin high producing strain	4.819
DRR006523	Root Summer glycyrrhizin low producing strain	44.047
DRR006524	Root Summer glycyrrhizin low producing strain	43.499
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.286
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.341

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.888
SRR2868004	Drought Stress (root)	41.146
SRR2967015	Control (root)	40.093

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.217
SRR9715740	Leaf	20.482
SRR9715741	Leaf	22.061
SRR9715739	Root	16.741
SRR9715742	Root	17.373
SRR9715743	Root	15.194

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.182
SRR8749028	MeJA induced 9h	27.783
SRR8749029	MeJA induced 9h	15.328
SRR8749030	Uninduced	9.870
SRR8749031	Uninduced	3.147
SRR8749032	Uninduced	6.528

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.395
SRR8400027	Control - Root	49.955