Gene detail

Gene detail information of Glyur000088s00007691.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01060.1	1.00E-77	myb-like HTH transcriptional regulator family protein
NR	XP_004486394.1	0	PREDICTED: myb family transcription factor APL-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8GUN5\|PHL1_ARATH	3.00E-50	Protein PHR1-LIKE 1
trEMBL	tr\|K7LBB2\|K7LBB2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G02040.3}

Sequence

Transcript Sequence

>Glyur000088s00007691.2
CTAGAATATAAATTTAGAGTGAGAAAGAGTTAGAGATAGATAGAAACAGCGTGACATTTGTTTTTGTTTGGTTCCATTTTCCAATTGATGAGAAGATTAATGATTCGATGTAGCAACCCGAAAAAATAAAAAGATTAAATTTTATTGGAGTGGAGGGTATCACTGTATAGGAAGAGAGAGAAGGCAGAGAGCACAGCACCACTACACAGCTCCGAAATAGGAGGGGGCGAAAATTTGTATGCGTTGGATATCGTAGATCTGGATAAATGACAAATGTATCATCCAAACAATGTCCCTAATTTAGTTCATGGTCAGCACATAGACTGTGGTAGGAGCACAATGGATCCTGGTAATGGAGGAAACAGTCTCACCAACAACTCTAATCTCGCTTCAAAACAACGTTTACGGTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTTCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAAAGCCATTTACAGAAATACCGATTGGCAAAATACTTACCCGACTCTTCATCCGATGAAGGGAAAAAGGCTGACAAAAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCATCGGGGATGCAGATTACTGAGGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAGTTAAGGATAGAAGCCCAGGGTAAATATTTGAAAAAGATAATTGAAGAGCAACAGCGGCTCAGCGGGGTTCTTTCAGAGGCACCTGGCTCTGGGGTTGCAGCCCCAACTCCAGGAGATATGTGCCAAGAACCTGACAATAAGACAGATCCGGCAACCCCCGACCCAGAAAAGGCTGCCAAAGAGCATGCCCCGGCAAAGAGCCTTTCGGTTGAATCCTTTTCTTCTCACCATGAACCAATGACACCGGATTCTGGTTGCCACATCNGTTCCCCTGCTGACAGCCCGAAAGGGGAGAGATCAACTAAGAAGCAACAAGCATGCATGGAAGGAACATATTCTAAACCAGACATGGTGCTTCCACATCAGATACTGGAGTCAAGCATGTCATCATACCAGCAACCAACCACAGTTTTCCTTACCAGAGAGCACTTTGATCCTTCTTTAGGTATATCTACCAGAAGTGGTGAGGATTTGGACAAGGTTGGTGGTGGCAGTAATATGTGATTTGGGGGTGTAATATTATATGCAGGCTGTGAACTAGGACTCATTCTATCATCCTTGTAAGGCTTAGTTTGTGTTATATGTATTGCTTAATAGAGATGGAGGAACCTGTTCTTCATAAGATTTTTCAAGGTTTTTTAGTTTTCAGTTCAATACTTGACNAAATACACAGCCTTTAATTAATTGCTTTTAGAGAACTGCTTTGAATTGGGTTAATTGAAAGTATATTGTCATCTGCTCCCATGCATCTTGAGCTACCAATGTAACTTTTCTTGAGGATGTGACAACGGCTAATGGGAATCACATCTTGGACGGCACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	28067	32825	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007691.2	PF00249.26	Myb_DNA-binding	43	94	1.30E-17
Glyur000088s00007691.2	PF14379.1	Myb_CC_LHEQLE	127	175	1.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.395
SRR1783600	control	71.726
SRR1783602	moderate drought stress	81.383
SRR1811619	moderate drought stress	80.915

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	126.894
DRR006520	Root Summer glycyrrhizin high producing strain	124.959
DRR006521	Root Winter glycyrrhizin high producing strain	76.631
DRR006522	Root Winter glycyrrhizin high producing strain	74.216
DRR006523	Root Summer glycyrrhizin low producing strain	99.953
DRR006524	Root Summer glycyrrhizin low producing strain	100.015
DRR006525	Leaf Summer glycyrrhizin high producing strain	98.455
DRR006526	Leaf Summer glycyrrhizin high producing strain	98.347

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.362
SRR2868004	Drought Stress (root)	111.595
SRR2967015	Control (root)	110.956

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	114.912
SRR9715740	Leaf	155.663
SRR9715741	Leaf	125.809
SRR9715739	Root	29.609
SRR9715742	Root	53.987
SRR9715743	Root	51.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	79.371
SRR8749028	MeJA induced 9h	69.132
SRR8749029	MeJA induced 9h	61.944
SRR8749030	Uninduced	39.576
SRR8749031	Uninduced	18.320
SRR8749032	Uninduced	27.248

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	100.184
SRR8400027	Control - Root	101.561