Gene detail

Gene detail information of Glyur000088s00007685

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10770.1	4.00E-77	Eukaryotic aspartyl protease family protein
NR	XP_007147550.1	0	hypothetical protein PHAVU_006G134200g [Phaseolus vulgaris]
Swissprot	tr\|Q9LS40\|ASPG1_ARATH	7.00E-63	Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor)
trEMBL	tr\|V7BNH0\|V7BNH0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19544.1}

Sequence

Transcript Sequence

>Glyur000088s00007685.1
ATGAGCGGTGACACTGCAACTAACAGGCCGGCTGTGCATCTGATGCTTGATGCCCATAATGCATATACAGGAAAAAAGATGAGGCAATTATGTAGACTAAACTTGCAAAAAGTTCATTTTGCAGATAATGATTTAAGGCACAAGCAAGGTGGCATGCAGCTCAATTTGTACCATGTTACAGGCCTTGACTCTTCTCTGGCAGCATCCAGAACGTCACCATTTTTCTTCTCTGACATGTTCACGAAAGACGAGGAGCGTGTCAGATCTATCCATTCCAGATTAGCAGCTGACAACAAGGTGGATGTCAGCAATTCAGACACTACTGCCTCTTCCAATAAAGTGATTGGGGGACCAAAGCAAGTGAGCACACCACTGAAATCAGGTATTTCAATTGGGTCAGGTAATTACTATGTGAAAATAGGACTTGGGACCCCTGCAAAGTATTTCAGCATGCTTGTAGACACTGGTAGCTCCCTTTCCTGGCTCCAGTGCCAGCCTTGTACTATATACTGCCATGTGCAGATTGACCCTATATTCAACCCTTCCACATCCAAGACCCACAAGACCTTCCCATGTTCATCCACTCAGTGTTCCTCTCTCAAGAGCTCCACACTCAATGCTCCAAGTTGTTCAAGACTTACTGGTGCTTGTGTTTACAAGGCAAGCTATGGTGATCAATCTTTCTCAATTGGTTACTTGAGTCAAGATGTGCTTACCTTAACACCACAAGAGACACTACCAAGTTTTGTGTATGGTTGTGGTCAGGACAATCAAGGGTTGTTTGGAAAGGCTGCAGGTATCTTAGGCCTAGCCAATGATAAGCTCTCTATGCTTTCACAACTGTCCACCAAATATGGCAATGCCTTCTCCTATTGTCTTCCAACATCTTTTTCTGCACCAGATAACTCTTCCAAGGAAGGTTTCTTGTCCATTGGAAGCTCATCATTGATATCATCTTTATCATACAAGTTCACTCCCTTGGTTAAGAATCCAAGGGTTCCAAGCTTATATTTTGTGNATTTGACAACAATCACTGTGGCTGGAAGGCCACTGGAAGTGGCAGCATCAAGTTATAAGGTGCCTACTATCATAGACTCTGGTACAGTTATCACAAGGCTACCTATGTCTGTTTATACTGCACTGAAAAAGGCTTTTGTGATGATCATGTCCAAAAAGTATGCACAGGCCCCAGGAATTTCCATATTGGATACTTGTTTCAAAGGGAGTTTTAAAGGGATGTTGTCAGCAGTGCCAGAGATTCAGATGATATTTCATGGAGGTGCTGGCCTACAACTTAAGGGTCCTAATACCCTTATTGAACTCAGGAAGGGAATAAGTTGTTTGGCCATAGCTGGTTCCTCTGAAACCAACCCCATTTCCATTATTGGGAATTATCAACAACAGACATTTAAGGTGGCTTATGATGTTGCCAATTCCAAGATTGGATTTGCACCTGGTGGCTGCCAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	9125	12091	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007685.1	PF14543.1	TAXi_N	136	313	1.20E-40
Glyur000088s00007685.1	PF14541.1	TAXi_C	337	485	3.30E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	47.157
SRR1783600	control	47.552
SRR1783602	moderate drought stress	40.078
SRR1811619	moderate drought stress	40.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.170
DRR006520	Root Summer glycyrrhizin high producing strain	5.039
DRR006521	Root Winter glycyrrhizin high producing strain	2.306
DRR006522	Root Winter glycyrrhizin high producing strain	2.271
DRR006523	Root Summer glycyrrhizin low producing strain	1.050
DRR006524	Root Summer glycyrrhizin low producing strain	0.882
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.146

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.324
SRR2868004	Drought Stress (root)	2.739
SRR2967015	Control (root)	3.383

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.910
SRR9715740	Leaf	7.766
SRR9715741	Leaf	6.549
SRR9715739	Root	58.067
SRR9715742	Root	49.089
SRR9715743	Root	53.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.121
SRR8749028	MeJA induced 9h	0.140
SRR8749029	MeJA induced 9h	0.106
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.005

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.396
SRR8400027	Control - Root	44.646