Gene detail information of Glyur000087s00008585 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23690.1 | 2.00E-39 | |
| NR | XP_007156867.1 | 9.27E-85 | hypothetical protein PHAVU_002G024200g [Phaseolus vulgaris] |
| trEMBL | tr|V7CIX4|V7CIX4_PHAVU | 3.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:ESW28861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 349080 | 349580 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008585.1 | PF14009.1 | DUF4228 | 1 | 112 | 3.80E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.312 |
| SRR1783600 | control | 3.364 |
| SRR1783602 | moderate drought stress | 15.806 |
| SRR1811619 | moderate drought stress | 14.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.229 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.481 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.299 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.430 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.839 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.863 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.131 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.004 |
| SRR2868004 | Drought Stress (root) | 1.644 |
| SRR2967015 | Control (root) | 2.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.851 |
| SRR9715740 | Leaf | 3.920 |
| SRR9715741 | Leaf | 3.228 |
| SRR9715739 | Root | 96.962 |
| SRR9715742 | Root | 26.329 |
| SRR9715743 | Root | 40.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.018 |
| SRR8749028 | MeJA induced 9h | 19.961 |
| SRR8749029 | MeJA induced 9h | 27.559 |
| SRR8749030 | Uninduced | 18.784 |
| SRR8749031 | Uninduced | 4.330 |
| SRR8749032 | Uninduced | 13.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.115 |
| SRR8400027 | Control - Root | 12.116 |