Gene detail

Gene detail information of Glyur000087s00008581

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50820.1	1.00E-139	photosystem II subunit O-2
NR	AFK43771.1	0	unknown [Lotus japonicus]
Swissprot	tr\|P14226\|PSBO_PEA	0	Oxygen-evolving enhancer protein 1, chloroplastic (Precursor)
trEMBL	tr\|I3SU29\|I3SU29_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK43771.1}

Sequence

Transcript Sequence

>Glyur000087s00008581.1
ATTACATTATCATGGGTTCTTTAAGCATAATGTATCATCAGTTGGTCAAAATTTTGGATATGATACGTGTATCCAGTATCCATACATATATAAGCATTGCTAAGCCTATTTCTGTGCTTGGGCGTGACTAATAATAACTTGTTTGGTGATCATTTTCTCCCAATTGAGAGAACCTTCCAACGTGGCAACCTACGAAAAACCATTGACAATTTGACATTAGCTGCAGTCNTCCAATAATGGATGGCCTTATCCTATCGGAAATCTTGCTAACACCATAGCCACCAAAAAATTGTACTCTGTCTATTATCCGCCAACACCAAAAAAAAAAAAGAAAAAGAAATTGCAAGTTGTAATCAAAAAAGAAAACACAAAGAAGGGAAAAAAAAACACATTTTGGTGGCAATGGCAGCCTCACTGCAAACTGCAGCTACCCTCATGCAACCCACCAAGGTGGGACTCATCACTGGTCGCAGCTCCACCACTTTGCATCTCAANTCTACACAATCCATTTCTAAGGCTTTCGGGTTAGAATTCAATGGAGCTAAGCTCACTTGCTCTCTTCAGGACTTTGCTCACAGGTGTGCCGATGCTGCCAAAGTTGCAGGATTCGCCCTTGCTACCTCCGCTCTTGTTGTCTCTGGAGCAAGTGCGGAAGGTGTTCCAAAGAGGCTAACCTACGATGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAACCAGTGCCCAACCATAGAAGGTGGAGTGGACTCATTCGCCTTCAAGCCAGGGAAATACAATGCAAAGAAGATTTGCCTTGAGCCAACTTCATTCACAGTCAAGGCAGAGGGTGTGACCAAGAACTCCCCTCTTGCATTCCAAAACACAAAGCTAATGACCCGCTTGACCTACACACTCGACGAGATCGAAGGACCCTTCGAAGTTTCCTCCGATGGCACAGTCAAGTTCGAGGAGAAAGACGGAATTGACTATGCTGCGGTTACNGTTCAGCTCCCCGGTGGCGAGCGCGTGCCATTCCTCTTCACCATCAAACAGTTGGTTGCATCGGGGAAACCAGAGAGCTTTGGTGGGGAGTTTCTGGTACCGTCTTACCGCGGATCCTCTTTCTTGGACCCCAAGGGAAGGGGTGCATCCACTGGGTATGACAATGCTGTTGCTTTGCCTGCTGGTGGCAGAGGGGATGAGGAGGAACTTGCCAAGGAGAACAACAAGAGTGCTTCTTCATCTAAAGGGAAAATCACATTGAGTGTGACTCAGAGCAAGCCTGAGACTGGTGAGCTTATTGGTGTGTTTGAGAGCCTTCAGCCTTCTGATACTGATTTGGGAGCTAAAGCTCCTAAGGATGTTAAGATCCAAGGCGTCTGGTATGCTCAGCTTGAGTAGTCATAGAGCTTTTGTTGGTTTAATTAGATTTTGTTAACAAAATCTTGNGACCCCAATTGGCGAAGCAGCACCAAGAGCGTTATCATGTGTGTATATTATTGTAATGACTTGGATTATAATGCTTATTAATATGTCTATGTTTAAGTTTTGGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	335033	337362	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015979 photosynthesis

GO:0042549 photosystem II stabilization

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0016021 integral component of membrane

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008581.1	PF01716.13	MSP	94	330	6.90E-111

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.047
SRR1783600	control	0.047
SRR1783602	moderate drought stress	0.049
SRR1811619	moderate drought stress	0.049

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.139
DRR006520	Root Summer glycyrrhizin high producing strain	0.139
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	590.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	588.193

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.623
SRR2868004	Drought Stress (root)	4.378
SRR2967015	Control (root)	0.551

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	339.058
SRR9715740	Leaf	367.064
SRR9715741	Leaf	267.964
SRR9715739	Root	0.160
SRR9715742	Root	0.406
SRR9715743	Root	0.859

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.349
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.294
SRR8749030	Uninduced	0.329
SRR8749031	Uninduced	0.148
SRR8749032	Uninduced	0.651

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.013
SRR8400027	Control - Root	1.521