Gene detail information of Glyur000087s00008578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37210.1 | 2.00E-59 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004511989.1 | 0 | PREDICTED: nuclear autoantigenic sperm protein-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|I1J919|I1J919_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 323067 | 327948 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008578.1 | PF00515.23 | TPR_1 | 76 | 105 | 0.0029 |
| Glyur000087s00008578.1 | PF10516.4 | SHNi-TPR | 271 | 307 | 1.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.860 |
| SRR1783600 | control | 15.811 |
| SRR1783602 | moderate drought stress | 17.778 |
| SRR1811619 | moderate drought stress | 17.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.661 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.339 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.088 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.579 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.586 |
| SRR2868004 | Drought Stress (root) | 37.621 |
| SRR2967015 | Control (root) | 34.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.115 |
| SRR9715740 | Leaf | 64.169 |
| SRR9715741 | Leaf | 44.058 |
| SRR9715739 | Root | 25.611 |
| SRR9715742 | Root | 31.418 |
| SRR9715743 | Root | 29.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.336 |
| SRR8749028 | MeJA induced 9h | 20.506 |
| SRR8749029 | MeJA induced 9h | 24.699 |
| SRR8749030 | Uninduced | 10.467 |
| SRR8749031 | Uninduced | 6.312 |
| SRR8749032 | Uninduced | 12.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.651 |
| SRR8400027 | Control - Root | 46.725 |