Gene detail

Gene detail information of Glyur000087s00008577

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37200.1	1.00E-88	Thioredoxin superfamily protein
NR	XP_004511987.1	1.93E-145	PREDICTED: thioredoxin-like protein HCF164, chloroplastic-like [Cicer arietinum]
COG	NP_484614.1	2.00E-44	thioredoxin-like protein [Nostoc sp. PCC 7120]
Swissprot	tr\|O23166\|TR164_ARATH	3.00E-110	Thioredoxin-like protein HCF164, chloroplastic (Precursor)
trEMBL	tr\|V7CF92\|V7CF92_PHAVU	8.00E-145	Uncharacterized protein {ECO:0000313\|EMBL:ESW28852.1}

Sequence

Transcript Sequence

>Glyur000087s00008577.1
ATCCCTTCCTTGTGATTTTAAATATATTTTTCTTATTAGCGGTGCCAAATGCCAATTGCAATATAGCCAGAAGATATTTTTTTTTTTTGGATTACCCCCGTGGCCTTGAATGGCTCGCCTCTCTTCAAATCCCATCGGTCTCCATAGATTCCGACCATGCCTTCGTATTCCTGAACCTCCCCAATTCNTTCTAAATCCTCGCCGGCGTCACTTCAACTCTCGCAAATTCCACACCTTAGCCTGCCAAACAAATCCAAACCTCGAGGAAAAAGATACCTCCTCAACAACCTCTCAGGATATACCAATCGTGGTTGAGCCTAGCACGGTTAATGACCAGACCAGTAAGGCGACAAGTTCTTCACCCGTAGATACTTCCTCCGCTCTTCCACAACTCCCAAGCAAGGATATCAATAGGAGAGTCGCAGTTGTTTCTACCTTAGCTGCTTTGGGACTTTTCGTATNTACAAGATTGGATTTTGGGGTTTCTTTGAAGGATCTCTCTGCCNCTGCATTGCCTTACGAAGATGCTCTCTCGAATGGTAAGCCCACTGTCGTGGAGTTTTATGCTGATTGGTGTGAGGTGTGTCGTGAATTAGCTCCTGACGTCTACAAAATAGAGCAGCAGTACAAGGGTCGAGTGAACTTTGTGATGTTGAATGTTGATAACACAAAGTGGGAGCAAGAGCTTGACGAGTTTGGNGTGGAGGGTATTCCACACTTTGCATTCCTTGATAAAGAAGGGAATGAGGAGGGCAATGTGGTGGGTAGGCTTCCAAGACAGTACCTGCTTGAAAATGTGGATGCCCTTGCTCGTGGAGAAGCATCGGTGCCTCATGCACGTGTTGTAGGCCAGTATTCAAGTGCTGAGGCAAGAAAGGTGCATCAAGTTGTGGATCCAAGAAGTCATGGTTAGATGACAACATACAGTACTTTCTTTTACTGTTTTACAGTAACTTGTTAGATTTGTCAGTGAGCAACACCTGAACAGACAAACAACTCATTGCTCATCTTGCCTTTTTTTCTTGTTCATCACAAAGCTTATTCATAAACATTGTGCAAGTCTTATAGATTAGGATCCAAAACTTGATATCAATGGCAATTGTTANCTCAAATGACTATTTCTACACAATCTCTGTATAGGTAAAGAGGCACTTGAATGCTTACAAGTCTGCCACTGTTATGTGTTTGGGCAATATATATCTGTTTGCCCTCTTCATTGATCATAATTAACTACCTATGATTAAGAAATTTAAATGACATTTGCTGACNTGTGTGAAAAATCGAGACACTTGTGTTGATTACATGGCACATTAGCGCAAGTCCGGATCGAGTGATTATTATCAATAGAAAAATAGAAACAATCTTATTTTGAGAGAAAAACAAAGAGGAAACAAGCAGCAAAAATAGGGCATGGCTCCAGCATTCCTGTCATTAATACCTGGCAGAGCCAGAATATGCAGTGTTAGGCTTAGTGACAAACAACAAAGACTAAACTGAAGCAGCGTTAACGCGTACACATGGGCGCAACATATAGCCATAGCGTCAAATTAGGCATTTTAGATTACCGAGACACCAAAAGAATTATCTTTAGTTGTGCTTACTTAATAGACAATAATAGCTTAAGGTGTTGGTTGGCTTTTTCTATTCATGATAATACATTGTAATTATTCATAGTTTTTCATCCCATAGAGAATTTTGTATATCTATTGCTGATGATTTCTGCGTCCAAGCTTTGGAAGTTGTTAGTAAAGCAGAATTCTTAAGCACACAAAAAATATCTATAGCAATATCAGCGAAAGAGAAAAAAAAAAAAAACTGTTATATATGCCTTTAGTATTATTCACATTGCTGGAGGCTTATGTCACCGAACGACGTTTCCCAACAAGGTGTTTGTTGAAGGTGAGCTCTGTCCACTTGACCAAGGATCATGCACTGATACAGGGGAGCAGTCTTTCACCTCCACAGAATGCAAAAAGCTCTCATCCATGGGTGGAACAATCAATCCCTCAGCCCCTTGCCCTGCTTTCTTAAACTTAATAATACCACTCAGTGACTTCTCACTTCCATTGTGAGGCGATGAACTCGCGGACCCAACCGATGAACCCAAGCATATGGTTTCCTCCATAGTTGCCCATCCACTGCGCCTGATGTGTTCTAGCTCCTCAGCCACTTCCATCATAGTAGGCCTCGCGTCGCTATGAAAAGCNAGGCATCTAAATGCAAGCTCAGCCACCTTATGAATGGAATACAGTGTCCAAGCATCTCTATGTGGTTCAAGGAAGGGATCTATGATCTCATCTACAGAACCTCTCCTAATCCTATCAACAGCAAGTGCAGCTAAGTTAATCTCGCTCTGAGGCCGGCCGAAATCAACCACTTTCAGGGCAGTTATTATCTCTACCAAAACCACTCCAAAGCTGTAGACATCACTTTTATCAGAAAGGTGGAAGTTCTGGTGGTATTGGGGATCCACATAGCCTGGAGTCCCTTGTGGGGCAGTTGAGATATGTGATGTTTCCATCATGCCTAGTCTAGAAAGTCCAAAATCAGCTACCTTAGATTTGAAGCTATAGTCCAAGAGTATGTTACTGGATTTTATGTCTCTGTGGTAAATTGGGGGATGAATTGCAGAATGGAGATATGCTATGGCATTAGCCGTTTCAGAAGCAATGGTAAGTCGCATTGTCCATGGAAGGCCTTGACNCCTCTCTCTTTGCAAATGCTGAGATAGTGTTCCATTTGGCATATATTCATAAACAAGTATCTGCTCTCCCTCCTCAATGCAGCAACCCAGGAGGCGAACCAGATTCTGGTGACTCACCGAAGAAAGGAGCTTGATCTCGTTCATGACTTGGTCAACACTGTTGGTGTCTCTATGCCTTATCTTCTTTATAGCAACCCACTCATCATTGTGAAGTTTTCCAGCATAAACCGTACCGAAAGCCCCAGTTCCCAGCCTTTGTTTATCAGAGAAAGAATTTGTGGCTTTTTCTATTTCCTTGTAAGGGTAGAGAGGCACAACAGAGTTTCCTGCGGCTTCACGTAATAGGCGCTTTACTCTGGTATGTTTTCTCAACCAGGTAGAACGGCGCCTGACACAGTAGCATAGAAGAATGAGAGCAGCCACCACCAAAACTCCAGCTACAATCACTGTTAAGTATGAACACTCATGTAGCATTAATCAAAATTCTTCATTAAGAAATTTCACAAGTATATTTTTCTATGCATGTTTGTATCAGGATCGAGCGAAAACATATGCATTCAATAATATTGGATCAATTCATTAACAAGGATTTTCTTATGCAATCTTCTACATTGGATTCATATATGGGCACAAGTTAGTAATCCCAAAAGAAGAGTAGACCATAAAGATGTAAGGTTATATTATACCTCCAACGACAACACCGATTTTGGTTGCATTCCCACATCCCCCAGACGTTAATGTTGAAGCACTGCAGCTTGAGCTTGGAGCTGATGACAAGGCAGTAACCATACACAGAATTAAAAAGATGACAATATTTACTAAAGGAACAAAAAAAAAAGAATATATTAATCACCATTAGATGATTAATAGTTATTCACAACCAACCGATTTGGATGACCTGGATGTGCACTATCTAAAATGTTCCTTGTTGGTTGAGTCAAAAANAACTTTACGCAAGTTTTAGTTTTTGAAGACAGAATTGTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	317797	322075	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008577.1	PF00085.15	Thioredoxin	137	231	2.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.422
SRR1783600	control	4.440
SRR1783602	moderate drought stress	6.851
SRR1811619	moderate drought stress	6.873

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.470
DRR006520	Root Summer glycyrrhizin high producing strain	4.576
DRR006521	Root Winter glycyrrhizin high producing strain	9.388
DRR006522	Root Winter glycyrrhizin high producing strain	8.883
DRR006523	Root Summer glycyrrhizin low producing strain	6.726
DRR006524	Root Summer glycyrrhizin low producing strain	6.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.415

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.826
SRR2868004	Drought Stress (root)	15.480
SRR2967015	Control (root)	13.450

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.198
SRR9715740	Leaf	45.315
SRR9715741	Leaf	31.359
SRR9715739	Root	3.836
SRR9715742	Root	6.226
SRR9715743	Root	6.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.911
SRR8749028	MeJA induced 9h	29.082
SRR8749029	MeJA induced 9h	24.647
SRR8749030	Uninduced	45.978
SRR8749031	Uninduced	65.026
SRR8749032	Uninduced	37.681

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.128
SRR8400027	Control - Root	10.453