Gene detail

Gene detail information of Glyur000087s00008568

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G50420.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_003611834.1	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|Q9SCT2\|PP277_ARATH	Pentatricopeptide repeat-containing protein At3g50420
trEMBL	tr\|I1LHI2\|I1LHI2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G06340.1}

Sequence

Transcript Sequence

>Glyur000087s00008568.1
ATGCAGATGCAGATGCAGAAGATGCGATCGGTTACAAGTTACAACGCACAGCCACTGTTCTCGGTGTCCTCTGCAAGGGTTGGATCTCAAACTGGATATACCGATCCTTTGCAAAAGTCCAGTGTCAAACTTTATCTCAAGCCACGGTTGGAATCAGGTGGTCACAAGGTCACAGCCGTTGATCTTGCAGCTTAGTTCTTGGCCTCGCTTGCTCCAAATGAAAAGGTGATTCTTGTGGGACATAGCTTTGGAGGGATGAGCGTAGCCCTTGCAATGGACAAATATCCAGAAAAAATAGCACTTGGAGTTTTCATAGCAGCTTTTACTCCTGATACCCAACACAAGCCATCATATGTCTTAGAACAGTTCATTGAGAGATACCCACTAACGGGATGGTTAGACTCAGAGATTTCATTCAGTGGAAGCAAAACATTGTTGCTTCTTGGCTCCAAAGTCTTGTCCACTAAGTTCTATCAACTCTGCTCCACTGAGGATCTGGAATTGGTCAAGAGTTTAAAAAGGGTAGGGTCACTTTTTCCTGAAGATCTGTCTGAGGCAGAGAATTTCACCAAAGAGGGATATGGGTCGGNTCCATGTGCTTATATTGTTTCCAATGAGGACTTGGCAATTCCATTGGAGTATCAGCAATGGATGATCCAAAATGCTGGGATTGATGTGGTGCGTGTGATCAAGGGGGCAGATCATATGGTTATGCTTTGCAAACCTCAGGAACTCTCAGAGGCTCTTCTGGTGCAGAAGTGCAGCACTGCCACCTCACTGCGAGAGGCGCGTCAACTCCACGCCCTTTTATTAACTACTGCCACCGCCTTTGGCTCCAATTCTGCGTTTGTGTACAACAACATCATCTCCATGTATGCACGGTGTGGTTCACCCAGGGACTCTCACCTCGTGTTCGACAAAATGCCCCACAGAACTCTTGTTTCTTACAATGCACTTTTTGCAGCATGTTCTCGAGAACCAGAACATTCAATTTCTGCCCTCAAACTGTATGCCCAGATGGAAACTAAGGGTCTTAGGCCCTCCAGCATGACTTTTACTAGCTTACTTCAAGCATCTTCCTTGCATCAAGATCGGTGTATTGGGTCATTACTTCATGCCAAGAGCTTGAAGTTTGGTTTTTTGAATGATATTTGTGTCCAAACTTCTTTGCTTAATATGTACTCAAATTGCAGGGATTTGAGTTCAGCTGAATTGGTTTTTTGGGATATGGCTGAAAGAGATGATGTTGCTTGGAATTCTTTGATTATAGGATATTTGAAGAATAATAAGATCAAGGAAGGTGTGCATCTTTTCATTGCAATGGTGAGGGTTGGTTTTACTCCAACCCAATTCACGTATTGTATGGTTTTGAATGCCTGTAGTCGCCTGAAAGATTGTCATTCTGNGAGATTGATTCATGCCCATGTAATTGTTAGGAATGTTTCGCCCGATTTACACCTCCAAAATGCTCTGGTTGACATGTACTGCAGTGTTGGTAATACACAAACGGCACATAGAATTTTTAGTAGAATGGAAAACTGGGATTTAGTTTCTTGGAATTCCATGATTGCTGGGTATTCTGAGAATGAGGATGGAGAGAAGGCAATGAATTTGTTTGTCCAGTTGCAAAAATTGTGCTTTCCTAAACCAGATGACTATACTTATGCTGGCATTATATCTGCAACTGGTGCATTCCCATCTTCCAGTTATGGAAAACCTCTTCATGCTCAGGTTATTAAAGCAGGATTGGAGAGAAGTGTGTTTGTGGGAAGCACTCTAGTGTCCATGTATTTCAAAAATTACGAAANTGAAGATGCTCAGAGAGTATTTTATTCAATCCCAGGAAAGGATGCTGTTCTCTGGACTGAAATGATCACTGGTTATTCTATGGCTGATGGAATGAGTGCAATTAGATGCTTTTGTGAAATGTATCATGAAGCCCATGAGATTGATGACTATGTTCTCAGTGGAGTTTTGAGTGTCTGTGCTGACCTTGCAGTTTTAAGACAAGGTGAAATAATTCATTGTTATGCTTTTAAGTCGGGTTATGATGTTGAAATGTCTGTTTCTGGGAGTCTGATTGATATGTATGCCAAAAACGGTAGCCTTGAAGCTGCATATTTGGTGTTTTCTAAAGTTTCAGACCCTGATTTAAAGTGTTGGAACTCAATGCTCGGAGGATATAGTCACCATGGAATGGTGGAGGAAGCATTGAAACTTTTTGAGGAGATTCTTGAACAAGGTCTGGTTCCAGATCAAGTGACATTCTTGTCTCTATTGTCTTTATGCAGCCACAGTAGGTTGGTTGATCAAGGAAAAGTCCTCTGGAATCATATGAACAGCATTGGTTTGGTTCCTGGGCCTAAGCACTACTCTTGCATGGTAACTTTGTTGAGTCGGGCAGCATTACTGGAAGAGGCAGAAGAAATTATCAAAAAATCACCTTGTTTTGAAGATAATCTAGATCTATGGAGGATTTTGCTAAGTGCCTGTGTTATAAATAAAAATTTGAAAGTGGGAGTTCATGCAGCAGATGAAGTTTTGAGACTGGATGCAGAGGATGGTCCAACGCTTGTTTTGCTTTCTAATCTTTATGCTGCTGCAGGGAGATGGGATGAAGTTGCAAAAATAAGAACAAATATGAGGGGGTTGATGCTGGAGAAAGATCCAGGGTTAAGTTGGATTGAGGCCAAGGGTGACATTCATGTGTTCTCTTCAGGAGATCAATCACACCCCATGGTTGATGAGGTGCAGGCTGAACTGCATAGGCTAAAAAGAAATATGATTAGAAACGAAAATGATGACAGTGAGCCACAAAATGCATGTTACATAAGTTGCAGAAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	269365	276186	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008568.1	PF01535.15	PPR	199	224	0.0056
Glyur000087s00008568.1	PF13812.1	PPR_3	229	262	0.14
Glyur000087s00008568.1	PF13041.1	PPR_2	329	376	2.60E-09
Glyur000087s00008568.1	PF01535.15	PPR	404	428	0.04
Glyur000087s00008568.1	PF01535.15	PPR	432	459	2.10E-05
Glyur000087s00008568.1	PF01535.15	PPR	607	627	0.33
Glyur000087s00008568.1	PF13041.1	PPR_2	632	678	1.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.333
SRR1783600	control	3.244
SRR1783602	moderate drought stress	3.562
SRR1811619	moderate drought stress	3.519

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.824
DRR006520	Root Summer glycyrrhizin high producing strain	8.957
DRR006521	Root Winter glycyrrhizin high producing strain	2.226
DRR006522	Root Winter glycyrrhizin high producing strain	1.968
DRR006523	Root Summer glycyrrhizin low producing strain	2.270
DRR006524	Root Summer glycyrrhizin low producing strain	2.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.299
SRR2868004	Drought Stress (root)	3.634
SRR2967015	Control (root)	4.090

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.050
SRR9715740	Leaf	1.977
SRR9715741	Leaf	2.635
SRR9715739	Root	2.226
SRR9715742	Root	4.239
SRR9715743	Root	4.348

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.292
SRR8749028	MeJA induced 9h	2.991
SRR8749029	MeJA induced 9h	2.649
SRR8749030	Uninduced	0.655
SRR8749031	Uninduced	0.820
SRR8749032	Uninduced	0.712

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.951
SRR8400027	Control - Root	10.572