Gene detail information of Glyur000087s00008565 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50120.1 | 0 | Plant protein of unknown function (DUF247) |
| NR | KHN36255.1 | 0 | UPF0481 protein [Glycine soja] |
| Swissprot | tr|Q9SD53|Y3720_ARATH | 9.00E-62 | UPF0481 protein At3g47200 |
| trEMBL | tr|V7CIN4|V7CIN4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28761.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 264069 | 265676 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008565.1 | PF03140.10 | DUF247 | 107 | 519 | 5.00E-142 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.473 |
| SRR1783600 | control | 1.467 |
| SRR1783602 | moderate drought stress | 1.189 |
| SRR1811619 | moderate drought stress | 1.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.214 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.579 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.632 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.001 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.514 |
| SRR2868004 | Drought Stress (root) | 4.670 |
| SRR2967015 | Control (root) | 4.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.369 |
| SRR9715740 | Leaf | 0.039 |
| SRR9715741 | Leaf | 0.122 |
| SRR9715739 | Root | 2.240 |
| SRR9715742 | Root | 2.695 |
| SRR9715743 | Root | 1.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.055 |
| SRR8749029 | MeJA induced 9h | 0.114 |
| SRR8749030 | Uninduced | 0.156 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.703 |
| SRR8400027 | Control - Root | 4.170 |