Gene detail information of Glyur000087s00008556 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36910.1 | 8.00E-79 | Cystathionine beta-synthase (CBS) family protein |
| NR | XP_003611689.1 | 4.55E-137 | Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] |
| COG | YP_007130282.1 | 2.00E-27 | putative signal transduction protein with CBS domains [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|O23193|CBSX1_ARATH | 3.00E-98 | CBS domain-containing protein CBSX1, chloroplastic (Precursor) |
| trEMBL | tr|G7K5B0|G7K5B0_MEDTR | 2.00E-137 | Cystathionine beta-synthase (CBS) family protein {ECO:0000313|EMBL:AES94647.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 208279 | 214277 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008556.1 | PF00571.23 | CBS | 67 | 121 | 6.20E-16 |
| Glyur000087s00008556.1 | PF00571.23 | CBS | 161 | 215 | 1.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 106.712 |
| SRR1783600 | control | 106.878 |
| SRR1783602 | moderate drought stress | 91.056 |
| SRR1811619 | moderate drought stress | 92.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 98.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 95.953 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 134.640 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 133.483 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 102.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 103.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 150.751 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 149.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.867 |
| SRR2868004 | Drought Stress (root) | 36.607 |
| SRR2967015 | Control (root) | 52.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.549 |
| SRR9715740 | Leaf | 49.576 |
| SRR9715741 | Leaf | 43.723 |
| SRR9715739 | Root | 20.225 |
| SRR9715742 | Root | 39.336 |
| SRR9715743 | Root | 32.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.614 |
| SRR8749028 | MeJA induced 9h | 23.336 |
| SRR8749029 | MeJA induced 9h | 35.602 |
| SRR8749030 | Uninduced | 23.639 |
| SRR8749031 | Uninduced | 9.536 |
| SRR8749032 | Uninduced | 15.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 110.870 |
| SRR8400027 | Control - Root | 105.800 |