Gene detail

Gene detail information of Glyur000087s00008555

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36920.2	2.00E-97	Integrase-type DNA-binding superfamily protein
NR	XP_007155905.1	0	hypothetical protein PHAVU_003G241900g [Phaseolus vulgaris]
Swissprot	tr\|P47927\|AP2_ARATH	1.00E-131	Floral homeotic protein APETALA 2
trEMBL	tr\|V7CCN3\|V7CCN3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27899.1}

Sequence

Transcript Sequence

>Glyur000087s00008555.1
GGACTTTCCTCCGTGAGAAGCAAAACAAAAATAGATATAGAAATCAATTAATTGTTCAATTTTTCAGTGAGTGAATGAATGAAAGATAGAGAGAGATTGAGAAGCAAGTGGTTTAGTGAGAGAGAGAGAGAGAGAGAGAGAGGAACATTTTGGTGAGGTGAAGGGAGGGATGCTTTCGGCTAAGCTAGCTCAAACAGGCCTCGTCTATGCTGTATTGGGCAGTTAGGGGAATTACAAAGATCTTTGAACATCTCCTTCTTTTATTAACCTTTTTGCTATACCAATCTCTCTTATCTCTCTCTCTCTCTCACTCGTCGTAGGTTTGATTTTCCTTCTCTCAGTTCAGAAACATCGAGAGCTTCTTTCCACGACTTCTCTTTTCCCATATCTCCCTTATTTTATTCTCAAATCAAAGAAAGAGAAGGAAACAGAGAGAAGCTAAACAGGGAACGAGACCGAGAGGTCAAGACACAGAGTTTAAATAAAATTTCCCTTTTGCAGGCAACCCAACAGAGAATTTCTTTTCTTTTTTCATCTTTCTTCTCTTTTATACGATAAATCAGAAATCAGAAATCTGGGTTACTTGTCTTTTCTTCTGGCTAATGCCTGTGAAGCTAGCTCTCTCTAGCTGTAGCTACTACTAGAGAAGCCCAATAAATAAAAGTGAAAAAACCTGTNGCTATTCAGAAATTAGCAAAGAGAGCTGAAGAAGAAGAAGAATGTGGGATCTGAATGACTCACCCGATCAGAGAAAGGACTACGAATCCGAAGGATGGTCTTCCCNTAAGACTTCAATCGATGGTGACGATGACAATAAAGGGAAGAGGGTTGGATCTGTTTCCAATTCAAGCTCCTCTGCTGTGGTTGTTGAGGAATATGGATCCGAAGAAGAAGAAGAACAACAACAACAAGGTGGTGGTAACGGAACGCTGAAGAGAAGAAACTGTAACAGCAACAGTGGAAAGATATTTGGGTTCTCAGTGACCCATGATGATGAGTCCATGGATAGTGACCACCCACCGGTGACCCNACAGTTTTTTCCGGTGGAGGAGTCCGAGATGGNGGCACCCTCTGCCGCCGCCGGTGGTGGTGGTGGTGGAAGCTCTTCTTCCTTCCCAAGAGCTCACTGGGTAGGCGTCAAATTTTGTCAATCAGAACCACTTGGAGCTGGAAAATCAGTGGAAGTGTCTCAACCCGTGAAGAAGAGTCGCAGAGGACCAAGGTCAAGAAGCTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAGGTGTATCTGGGTGGATTTGACACTGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATCAAGTTCCGGGGAGTGGAGGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAGCAGATGAGCAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGGATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCGTATGACAAAGCAGCAATTAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATACGATAATGAGCTTAATTCTGAATCCTCAGGTAATGCTGTTGCAGGAGGTCATAATCTGGATTTGAGTTTGGGAAATTCGAGCTCAAAGCATAGCAATAGCACTCAAGCGCNATTGGGGAATCACAACCCGAATGCCGCCACTGATCAGCAATATCTGCCACCTGAATCTAATTGGAGGAATAATGGGGGAAGCAAGCCTAAGCTGGTGAGTATTCTACCAAAACCATGTAGTAGAGGAGGCAACATGGAAAGTACCTATGCTGCAAGGGATGGGCACGGAGAGAGTGAAGCCTTGCGAATGCTAAGCCAAACTCACCTTCATCAATCTCCACCCACTAATGACCAAATGCATAGATATGGTTCGTATAGGTCACCTGCAGAACAGCCTCAAATGCTTCACAATTTCCCTCATCTTCACCCATCAAGTTTTCACCATCTTTCAAGCAGCAGCAATGGAGGCCGAATTGGAAGTGAACTCTCATTATCATCAATGTCCACCGATCAACAACAACAACAATGGCAACCGGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATAAGACCCTCTTCCCAAGGTTGGCTGCAGAAAAATGGGTTCAACACTCTCATGAGACCCTCCTGAGTTAAATCATTGATCTCCCCTACCCCAATATTTTTCCTTCTGAGCAATGTACAAATGGATATGCGGTTTAGACTATTGCTTGTGTCCATCCTCCCCCTCCTCCTTTAGGAATCCCATACAAAACCATAACTTTACTATTGAGGTGAAACAAAGGGATAAAAGAAAGGAAAAGGAAAGTCGAATTGGGAACTAATTGGTTTTGGTCTTATTGGGTCAGTCAAACTAACAAACGGACGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	192857	196791	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2
EAR motif-containing Proteins	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008555.1	PF00847.15	AP2	172	221	2.20E-14
Glyur000087s00008555.1	PF00847.15	AP2	264	314	2.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.585
SRR1783600	control	35.529
SRR1783602	moderate drought stress	45.959
SRR1811619	moderate drought stress	45.840

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.120
DRR006520	Root Summer glycyrrhizin high producing strain	29.663
DRR006521	Root Winter glycyrrhizin high producing strain	5.807
DRR006522	Root Winter glycyrrhizin high producing strain	5.562
DRR006523	Root Summer glycyrrhizin low producing strain	30.579
DRR006524	Root Summer glycyrrhizin low producing strain	30.826
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.754
SRR2868004	Drought Stress (root)	53.871
SRR2967015	Control (root)	64.390

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.122
SRR9715740	Leaf	20.550
SRR9715741	Leaf	13.767
SRR9715739	Root	4.148
SRR9715742	Root	16.508
SRR9715743	Root	14.445

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.884
SRR8749028	MeJA induced 9h	16.010
SRR8749029	MeJA induced 9h	19.231
SRR8749030	Uninduced	14.348
SRR8749031	Uninduced	6.418
SRR8749032	Uninduced	8.441

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.462
SRR8400027	Control - Root	26.101