Gene detail information of Glyur000087s00008550 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67140.1 | 3.00E-64 | F-box/RNI-like superfamily protein |
| NR | XP_003611698.1 | 3.35E-103 | F-box protein [Medicago truncatula] |
| Swissprot | tr|Q9FH99|FB302_ARATH | 5.00E-80 | F-box protein At5g67140 |
| trEMBL | tr|G7K5B9|G7K5B9_MEDTR | 1.00E-103 | Ubiquitin ligase complex F-box protein GRR1, putative {ECO:0000313|EMBL:AES94656.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 148326 | 150549 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008550.1 | PF13516.1 | LRR_6 | 49 | 71 | 1.4 |
| Glyur000087s00008550.1 | PF13516.1 | LRR_6 | 107 | 127 | 0.98 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.507 |
| SRR1783600 | control | 0.557 |
| SRR1783602 | moderate drought stress | 0.857 |
| SRR1811619 | moderate drought stress | 0.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.427 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.400 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.711 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.524 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.946 |
| SRR2868004 | Drought Stress (root) | 29.688 |
| SRR2967015 | Control (root) | 22.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.326 |
| SRR9715740 | Leaf | 8.834 |
| SRR9715741 | Leaf | 9.205 |
| SRR9715739 | Root | 0.777 |
| SRR9715742 | Root | 0.463 |
| SRR9715743 | Root | 0.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.692 |
| SRR8749028 | MeJA induced 9h | 17.139 |
| SRR8749029 | MeJA induced 9h | 9.825 |
| SRR8749030 | Uninduced | 11.717 |
| SRR8749031 | Uninduced | 17.591 |
| SRR8749032 | Uninduced | 30.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.615 |
| SRR8400027 | Control - Root | 5.194 |