Gene detail

Gene detail information of Glyur000087s00008542

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36945.1	1.00E-95	PLC-like phosphodiesterases superfamily protein
NR	XP_006590655.1	3.15E-150	PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X2 [Glycine max]
COG	YP_001869900.1	4.00E-14	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q93XX5\|Y5713_ARATH	1.00E-88	PI-PLC X domain-containing protein At5g67130 (Precursor)
trEMBL	tr\|I1LHD7\|I1LHD7_SOYBN	1.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G05840.2}

Sequence

Transcript Sequence

>Glyur000087s00008542.1
GTTGTTTTCTCACAGTCACAGACATTTTACCTGCACAAAAGTCTCGCTCTCCAGAAAGGGAACACAAACAGATAGAGCGAGACTCTTTCCCCTCTCCTCTCAAACCGCAAAAGCAGGATGAAGGGGTTACAGAGTCGCATTCGCATCCGTAATTTACGAACCCAACTCCTGCTAATCGCTGTTTGTCTGTTCACCTGTTCGTCCAGCTCCAAGATCGGAGAAACTTGCGGGTCAGACAAAAAATGTGACGCAGGTCTCAGCTGCCAAACATGTCCTGCGAATGGGAATACCCGACCCAGATGTAGCCGGATACAGCCTGCAAACCCCACCTCCAAAGTGAAGGGTCTACCATTTAACCGGTATTCATGGCTAACAACACATAACTCGTTCGCTCTGGCTGGGGCGAGATCGGCCACCGGGTCTTTCATTATTGCTCCAATGAACCAGGAAGACAAAGTTGCTGATCAACTCAAAAACGGCGTTCGAGGATTTATGTTGGATATGTATGATTTCAACAACGACGTATGGTTGTGTCATTCCACTCAAGGCAAATGTTTCAACTTCACTTCATTCCTACCTGCAGTAGACGTGCTTAGAGACATGCGTTCATTTCTGGATGCAAATCCATCTGAAATCATCACCATTTTCATTGAGGATTACGTCACAGCACCCCAGGGTCTCACCAAGGTCTTCCAAGCTTCGGGGATTAACAAGTATATGTTCCCATTGAATCGGATGCCCACGAATGGTGAAGAATGGCCAACCGTGGATGACATGGTCAAGAAGAATCAGCGCTTTGTCGCTTTCACCTCCAAATCATCCAAGGAAGCTTCTGAGGGCATTGCTTACCAGTGGAAATACGTGAGGAATGATGGCGGAGGAGCCTCAGAAGCTGTTGATGTAGCAAACGGCCATCTCACTTGCGGGTGTGACAACATTGCCTATTGCAAGGCAAACGCTGCGATTGGCACATGTGATGTTCCTCCCATTTCTCCACCTCCACCTGCTGCAGAAGTTGGCCCCAGCGGAAACCAGCNGTCCCAGAATAATAAGACCAATAATAATCACGCGTGTATCGGTAGAACAGCCAAGCTGATGCAATCGGCTGTGTTAATTTTGGCTACGACAACTTTCTTGGCATGGCTATAGAATGCCACTGGTTTGGCAGAGTTTTTAATCATGTGAAAATATGTATCTTTGTATGTATGTATGTATCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	79511	84293	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

molecular_function
GO:0008081 phosphoric diester hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.383
SRR1783600	control	11.855
SRR1783602	moderate drought stress	7.952
SRR1811619	moderate drought stress	8.139

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.638
DRR006520	Root Summer glycyrrhizin high producing strain	9.532
DRR006521	Root Winter glycyrrhizin high producing strain	0.345
DRR006522	Root Winter glycyrrhizin high producing strain	0.443
DRR006523	Root Summer glycyrrhizin low producing strain	6.384
DRR006524	Root Summer glycyrrhizin low producing strain	6.777
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.880
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.997

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.895
SRR2868004	Drought Stress (root)	32.709
SRR2967015	Control (root)	35.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.818
SRR9715740	Leaf	25.268
SRR9715741	Leaf	13.622
SRR9715739	Root	8.712
SRR9715742	Root	13.856
SRR9715743	Root	11.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.152
SRR8749028	MeJA induced 9h	17.147
SRR8749029	MeJA induced 9h	12.364
SRR8749030	Uninduced	7.003
SRR8749031	Uninduced	7.809
SRR8749032	Uninduced	3.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.320
SRR8400027	Control - Root	35.688