Gene detail information of Glyur000087s00008537 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42930.1 | 6.00E-83 | alpha/beta-Hydrolases superfamily protein |
| NR | NP_001240924.1 | 3.77E-154 | uncharacterized protein LOC100795779 [Glycine max] |
| COG | YP_001515819.1 | 1.00E-13 | lipase [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q3EBR6|PLA16_ARATH | 2.00E-08 | Phospholipase A1-Igamma2, chloroplastic (Precursor) |
| trEMBL | tr|C6TNI2|C6TNI2_SOYBN | 1.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G39350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 37219 | 38605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008537.1 | PF01764.20 | Lipase_3 | 58 | 218 | 1.20E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 92.662 |
| SRR1783600 | control | 92.105 |
| SRR1783602 | moderate drought stress | 165.775 |
| SRR1811619 | moderate drought stress | 164.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.710 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.777 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.922 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.171 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.919 |
| SRR2868004 | Drought Stress (root) | 50.729 |
| SRR2967015 | Control (root) | 35.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.939 |
| SRR9715740 | Leaf | 1.988 |
| SRR9715741 | Leaf | 4.280 |
| SRR9715739 | Root | 37.460 |
| SRR9715742 | Root | 102.192 |
| SRR9715743 | Root | 92.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.040 |
| SRR8749028 | MeJA induced 9h | 0.292 |
| SRR8749029 | MeJA induced 9h | 0.068 |
| SRR8749030 | Uninduced | 0.249 |
| SRR8749031 | Uninduced | 0.099 |
| SRR8749032 | Uninduced | 2.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 75.117 |
| SRR8400027 | Control - Root | 26.193 |