Gene detail

Gene detail information of Glyur000087s00008532.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67030.1	0	zeaxanthin epoxidase (ZEP) (ABA1)
NR	XP_004511928.1	0	PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum]
COG	YP_631595.1	4.00E-56	FAD-dependent oxidoreductase [Myxococcus xanthus DK 1622]
Swissprot	tr\|O81360\|ABA2_PRUAR	0	Zeaxanthin epoxidase, chloroplastic (Precursor)
trEMBL	tr\|I1LHE5\|I1LHE5_SOYBN	0	Zeaxanthin epoxidase, chloroplastic {ECO:0000256\|PIRNR:PIRNR036989}

Sequence

Transcript Sequence

>Glyur000087s00008532.1
ATGGCTTCTTCTACCTTGTCTTACAACTCTCTCAATCCCTCAATGGCAGCTTTCTCAAGAACCCACTTCTCGATTCCTATGTATAAAGGGTTTCCACATGAAATTTCACATCTTGTGAGCTATGGAAGCAGAACCACCAAACAGCAGAGGAAGAAACTGATGACAGTCAAAGCAACAGTGGCTGAGGCACCACCTTCTGTCTCCAAGTCAACGCAAACCGTGGCTGAAAATGGTGGGGATCGAACCCCTCAGAAGAAGAAGCTTCGGGTGCTTGTGGCTGGTGGAGGGATCGGTGGGTTGGTTTTTGCTTTGGCTGCAAAGAGGAAAGGGTTTGAGGTAGTTGTGTTTGAGAAGGATTTGAGTGCTATAAGAGGGGAGGGGCAGTATAGGGGTCCAATTCAGATACAAAGCAATGCTTTGGCTGCTTTGGAAGCTATAGATTTGAATGTTGCTGAAGAGGTTATGAGAGTTGGTTGCATCACGGGTGATAGAATCAATGGGCTTGTGGATGGGGTTTCTGGGTACATCAAGTTTGATACATTCACTCCTGCAGCAGANCGTGGGCTTCCAGTCACAAGAGTTATTAGCCGAATGGCTTTACAAGAAATCCTTGCTCGTGCAGTAGGGGAAGATGTCATTATGAATGCCAGCAATGTTGTTGATTTTGTTGATCGTGGAAATAAGGTAATAGTGGAGCTGGAGAATGGTCAGAAATATGATGGAGATCTCTTAGTTGGCGCNGATGGGATTTGGTCCAAGGTGAGGACAAAGTTGTTTGGGGCAACGGAAGCTACCTACTCTGGCTATACTTGTTATACTGGTATTGCAGATTTTGTGCCAGCTGACATTGAAACTGTTGGGTACCGAGTATTCTTAGGACACAAACAATACTTTGTATCTTCAGATGTNGGTGCTGGGAAGATGCAATGGTATGCATTTCACCAAGAACCTGCTGGCGGTGTTGATATCCCCAATGGAAAAAGGGAAAGGTTGCTGAAGATATTTGAGGGCTGGTGTGATAACGTGATAGATTTGATAGTTGCCACGGAAGAAGAGGCAATTCTCCGACGAGACATATATGACAGGACCCCAACACTGACATGGGGAAAAGGCCGTGTGACCTTGCTTGGTGATTCCATCCATGCCATGCAGCCAAATATGGGCCAAGGAGGATGCATGGCTATTGAGGACGGATATCAACTTGCATGGGAGTTGGACAATGCATGGCAACAAAGTATAAAATCAGGCTCTCCAATTGACATTGATTCTTCCTTAAAGAGCTACGAGAAAGAAAGAAGATTACGAGTTGCCATTATTCATGGAATGGCTAGAATGGCAGCTTTGATGGCTTCTACCTACAAGGCATATCTGGGTGTTGGTCTTGGGCCTTTAGAGTTTTTGACCAAGTTTAGAATACCGCATCCTGGAAGAGTCGGAGGAAGGTTTTTTATTGACAAGGCAAGCGACCAGTTGCACAGATGGTTTGAAGATGATGATGCACTTGAGCGTGCTATTAATGGAGAATGGAATTTGTTACCATGTGGAGATGAAGCAGGCCCTTCGAAACCTATATGTTTAGATCAAGATGAGATGAAACCCTGCATAATCGGGAGCGTGCAGCAAGAAGATTATCCAGGAAGTTCAATTATAATACCTTTACCCCAGGTTTCTCAATTGCATGCTCGCATTAACTACAAGGATGGTGCCTTCTTCTTGACTGATTTGCGGAGTCAACATGGCACTTGGATCACTGACAATGAAGGAAGGAGATACAGGGTACCTCCAAATTATCCTGCCCGTGTCCGTCCCTCAGATGTGATTGAGTTTGGTTCTGATAAGGCTTCATATCGTGTAAAGGTGACAAGATCTGCTTCAAGAGTGTCTGAAAAGGAGGGGACACAAATTTTACAGGAAACATCTTCTAAACCTCATGTACTGTGTAAGTTCCAACCTTGGCTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	352	15808	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09838	ZEP, ABA1	EC:1.14.15.21	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008532.1	PF01494.14	FAD_binding_3	88	436	2.90E-15
Glyur000087s00008532.1	PF00498.21	FHA	534	610	2.10E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.951
SRR1783600	control	6.539
SRR1783602	moderate drought stress	8.262
SRR1811619	moderate drought stress	8.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.006
DRR006520	Root Summer glycyrrhizin high producing strain	10.332
DRR006521	Root Winter glycyrrhizin high producing strain	18.090
DRR006522	Root Winter glycyrrhizin high producing strain	18.089
DRR006523	Root Summer glycyrrhizin low producing strain	15.270
DRR006524	Root Summer glycyrrhizin low producing strain	15.261
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.069
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.059

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.739
SRR2868004	Drought Stress (root)	39.809
SRR2967015	Control (root)	36.646

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.890
SRR9715740	Leaf	52.049
SRR9715741	Leaf	36.018
SRR9715739	Root	6.277
SRR9715742	Root	15.047
SRR9715743	Root	12.143

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.733
SRR8749028	MeJA induced 9h	18.254
SRR8749029	MeJA induced 9h	6.925
SRR8749030	Uninduced	2.985
SRR8749031	Uninduced	1.680
SRR8749032	Uninduced	1.774

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.866
SRR8400027	Control - Root	24.969