Gene detail information of Glyur000086s00011552 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29050.1 | 1.00E-89 | TRICHOME BIREFRINGENCE-LIKE 38 |
| NR | AFK45250.1 | 4.12E-135 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8VY22|TBL38_ARATH | 2.00E-110 | Protein trichome birefringence-like 38 |
| trEMBL | tr|I3SYA8|I3SYA8_LOTJA | 2.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:AFK45250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 370433 | 372127 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011552.1 | PF13839.1 | PC-Esterase | 2 | 208 | 3.80E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.535 |
| SRR1783600 | control | 25.792 |
| SRR1783602 | moderate drought stress | 26.498 |
| SRR1811619 | moderate drought stress | 26.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.185 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.763 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.197 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.143 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.396 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.504 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.836 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 55.852 |
| SRR2868004 | Drought Stress (root) | 35.733 |
| SRR2967015 | Control (root) | 27.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 93.272 |
| SRR9715740 | Leaf | 75.010 |
| SRR9715741 | Leaf | 83.268 |
| SRR9715739 | Root | 7.958 |
| SRR9715742 | Root | 13.550 |
| SRR9715743 | Root | 12.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.697 |
| SRR8749028 | MeJA induced 9h | 82.758 |
| SRR8749029 | MeJA induced 9h | 245.955 |
| SRR8749030 | Uninduced | 9.291 |
| SRR8749031 | Uninduced | 24.441 |
| SRR8749032 | Uninduced | 64.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.767 |
| SRR8400027 | Control - Root | 50.898 |