Gene detail information of Glyur000086s00011551 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29070.1 | 2.00E-23 | Ribosomal protein L34 |
| NR | CBI30669.3 | 3.11E-37 | unnamed protein product [Vitis vinifera] |
| COG | YP_006448840.1 | 1.00E-06 | ribosomal protein L34, bacterial type [Desulfomonile tiedjei DSM 6799] |
| Swissprot | tr|P82244|RK34_SPIOL | 1.00E-32 | 50S ribosomal protein L34, chloroplastic (Precursor) |
| trEMBL | tr|D7TJJ7|D7TJJ7_VITVI | 1.00E-37 | Ribosomal protein L34 {ECO:0000256|RuleBase:RU000566} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 358860 | 361135 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011551.1 | PF00468.12 | Ribosomal_L34 | 173 | 209 | 3.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.026 |
| SRR1783600 | control | 41.811 |
| SRR1783602 | moderate drought stress | 24.734 |
| SRR1811619 | moderate drought stress | 24.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.291 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.887 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.687 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.842 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.618 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.718 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 189.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 189.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.329 |
| SRR2868004 | Drought Stress (root) | 32.413 |
| SRR2967015 | Control (root) | 27.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 168.039 |
| SRR9715740 | Leaf | 167.544 |
| SRR9715741 | Leaf | 126.676 |
| SRR9715739 | Root | 17.837 |
| SRR9715742 | Root | 22.416 |
| SRR9715743 | Root | 21.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.956 |
| SRR8749028 | MeJA induced 9h | 53.230 |
| SRR8749029 | MeJA induced 9h | 72.768 |
| SRR8749030 | Uninduced | 28.049 |
| SRR8749031 | Uninduced | 15.171 |
| SRR8749032 | Uninduced | 30.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.182 |
| SRR8400027 | Control - Root | 61.606 |