Gene detail

Gene detail information of Glyur000086s00011550

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34080.1	4.00E-99	Cysteine proteinases superfamily protein
NR	XP_004485885.1	1.07E-158	PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum]
COG	YP_006415684.1	4.00E-32	cysteine protease [Thiocystis violascens DSM 198]
Swissprot	tr\|Q7XWK5\|SAG39_ORYSJ	1.00E-107	Senescence-specific cysteine protease SAG39 {ECO:0000305} (Precursor)
trEMBL	tr\|I3S8V9\|I3S8V9_LOTJA	8.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:AFK36701.1}

Sequence

Transcript Sequence

>Glyur000086s00011550.1
ATGGTTATTACAGTTCATGAAATGAAGCATCTTATTGCTGTTTGCTTTGTGATCTTGTGGACATGTGCATACCCAGCCATGTCTCGAACTCTGCACAAATTATCCGTTGCTGAAACACACAGGCAATGGATGGTGCAATATGGACGCTCTTACACGGATGAAGCTGAGAAGCAGAAACGCTTACAGGTGTTCAAGGAGAATTTGGAATACATAGAGGAGTTCAACAATGCTGGCAACAAGAGTTACACTCTGGGCCTGAATCGGTTTTCTGATTTAACCAATGAAGAGTTCATAGCTTCACATACCGGACTCAGGATTCCAAAATCCAAACCAACCATGGCCTCAGTTGCACCCTTAAACCTGAGTGATGATGTTCCAACAAGTTTAGACTGGAGAGAACAAGGAGTTGTCACCGATATTAAGGACCAAGGCAATTGTGGATGTTGTTGGGCTTTTTCAGCTGTGGCAGCTGTGGAAGGCATAGTGAAAATCAGAAATGGGAATTTGATATCATTGTCGGAGCAACAACTGGTAGACTGCAATGATCAGAATCATGGGTGCGATGGAGGTTCAATGGACAACGCATTTCAATACATAATACAAAACAACGGTATTGCTAGCGAAGCCGACTATCCTTACCGAGGAGTTCCCGAAACCTGTCAAAATACGATGACAACCTCAGCTCAAATAAACGATTTTAAAGATGTGCCTCCTCCCAATGATGAACAACAACTGCTACAAGCCGTGGCAATGCAACCNGTTTCAGTTGGCATAGCTATCGGTGATGAATTTAAGGCATACACGGGAGGGGTTTATGATGGATCATGTGGACAAAGTATCAACCATGCGGTTACTCTAGTTGGTTACGGGACAAGTNCTGAATATGGCACAAAGTACTGGTTGGTCAAGAATTCTTGGGGTGAGGATTGGGGCGAGCGTGGATACATGAGGTTGGTGAGGGAAGGTGGTGATCCTCAAGGTCACTGTGGCATTGCTACGCATGCTTCTTATCCCACTCTCTAGCTAGTTTCAAATATACTATATATATAGGAATATCGGCGCACCGGTTCGTGCTGTTATAAATAAGTGTACTTACGTACCTTGTCATTGATTTTGCGTTTTCTTTGTCTTGGTCANCGTGTGTCTGTCTGTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	342335	344068	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011550.1	PF08246.7	Inhibitor_I29	41	97	4.30E-20
Glyur000086s00011550.1	PF00112.18	Peptidase_C1	125	339	2.00E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.033
SRR1783600	control	0.046
SRR1783602	moderate drought stress	0.066
SRR1811619	moderate drought stress	0.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.573

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.918
SRR2868004	Drought Stress (root)	0.102
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.688
SRR9715740	Leaf	18.297
SRR9715741	Leaf	34.875
SRR9715739	Root	0.000
SRR9715742	Root	0.051
SRR9715743	Root	0.530

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.196
SRR8749028	MeJA induced 9h	7.786
SRR8749029	MeJA induced 9h	21.161
SRR8749030	Uninduced	0.668
SRR8749031	Uninduced	0.896
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.052
SRR8400027	Control - Root	0.074