Gene detail

Gene detail information of Glyur000086s00011546

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27430.1	2.00E-115	ARM repeat superfamily protein
NR	XP_003546026.1	0	PREDICTED: U-box domain-containing protein 7-like [Glycine max]
Swissprot	tr\|Q0IMG9\|SL11_ORYSJ	3.00E-09	E3 ubiquitin-protein ligase SPL11
trEMBL	tr\|I1MER6\|I1MER6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G08830.1}

Sequence

Transcript Sequence

>Glyur000086s00011546.1
GTTCTCTGCATGTGCGCTGTGCTTCCCCTGTATATTAAGTTCACAGAGCCCTTCCAATAGTCTCAATTGATTCACTTTCTCTCCCTTCTCCTCTGTTCCTTCTCTGTCTCCAAACTCAGAAAGAGAAACAAAATCATCATAAAAGAACCTAAAACACCAAACACCCAGCTTCGTTCTTTCCTCCCTTAACATAACATGCCAACTCCTTCATCATCATCATCATCTTCTTCTTNTTCTTCATCTTCTATTTGGGTATTGTCTAACATCAAGCTTCAATTCTTTGCTCGTATCAGACGGTTTCTTCAATCCAAAGCAACCAGAAAGAGCTTCGACCCTTCTGATCGGTTTGAAAAAGCAAAAAACAGAACTGAACAGAACAAGGTTGAAAATATTATTGAAACAGTTCAAGTTATGGAGAAACATGAAGAGGAAGAGGAGGAGGAGGAGTCTGCAATCCTGTTGCAGAGGACTGTGAAGATGCTTCACTTTGGAAGCTGGNAAGAGAAGGAGGTTGCAGCTAAAGAGATTGAAAGTTTAGCTAAAGAAGATGTTAAGGTTAGAAAGTTGATAACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTCGTGTCACCGGTTTCTAGCCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAAGTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAATTGACCTTGTAGATGAATCAACGACGTGTGAGTTGGCAAAGTTGCTTTTATCATTGTCATCTCTTGCAAACACCCAATTCCCTTTTGCTTCATTAGATTTCCTCCCACTGCTTAGAAACATTCTTAGGACAGACTCAAGTTTTGATACCAAAGGGTCATGTTTGGGAGCCTTGTACAACCTATCAACTATGTTAGAGAATGCAGGCCCTTTGGTTTCTAGTGGGGTTGTTCCCATCCTCTTGGAACTTTCCTTGGTGAAAGATATTTCAGAGAAGGCACTTGCCACTTTAGGGAACTTGTTGGTGACTTTGATGGGAAAGAAAGCAATAGAGAACAGCTCAATGGTGCCACAAAGCTTTGTTGAGATCTTGTCATGGGAAGATAAACCCAAATGCCAGGAGTTGTCAGTTTACATTTTGATGATCCTAGCACATCAAAGTTCACCCCAGAGGGAGAAAATGACACAGGCTGGGATTGTTACTGTGCTTCTGGAAGTGGTTTTGATGGGGAGCCCTTTGGCTCAAAAGAGAGCAATGAAACTGCTGCAATGGTTTAAGGATGAAAGGCAAACAAGGATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGTTCACCTGTGAATCAAAGAGATGGTAAAGAAGGGAAGAAATTGATGAAGAGTTTGGTGAAACAAAGCCTGCATAGGAACATGGAAATAATAACTCAGAGGGCAAATGCAGCTGAGGAGTCCTCCAAACTGAAGTCTTTGGTCATCAGCACTAGTTCCAAGAGTTTGCCTTACTAAAAGGGCTTTTTCCATTTTTTTTCTTTTTTGACTCAGTTTTAGACTTTTAGCAATTTAGGCTTTCCTCATATGTGCCATTCTATGGCACCAATGAAAAGCAGTAGAACGTGAAAATGTCACCTTGACATTTCTTGCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	325740	328896	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.594
SRR1783600	control	0.579
SRR1783602	moderate drought stress	0.378
SRR1811619	moderate drought stress	0.375

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.941
DRR006520	Root Summer glycyrrhizin high producing strain	0.906
DRR006521	Root Winter glycyrrhizin high producing strain	9.578
DRR006522	Root Winter glycyrrhizin high producing strain	9.648
DRR006523	Root Summer glycyrrhizin low producing strain	3.382
DRR006524	Root Summer glycyrrhizin low producing strain	3.498
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.112
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.111

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.222
SRR2868004	Drought Stress (root)	15.841
SRR2967015	Control (root)	13.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.120
SRR9715740	Leaf	0.381
SRR9715741	Leaf	0.969
SRR9715739	Root	0.387
SRR9715742	Root	1.777
SRR9715743	Root	1.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.569
SRR8749028	MeJA induced 9h	5.984
SRR8749029	MeJA induced 9h	3.139
SRR8749030	Uninduced	6.011
SRR8749031	Uninduced	2.029
SRR8749032	Uninduced	5.157

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.003
SRR8400027	Control - Root	4.314