Gene detail

Gene detail information of Glyur000086s00011536.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29160.1	2.00E-40	Dof-type zinc finger DNA-binding family protein
NR	XP_003546029.1	5.82E-63	PREDICTED: dof zinc finger protein DOF1.5-like [Glycine max]
Swissprot	tr\|P68350\|DOF15_ARATH	2.00E-50	Dof zinc finger protein DOF1.5
trEMBL	tr\|I1MER9\|I1MER9_SOYBN	2.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G08860.1}

Sequence

Transcript Sequence

>Glyur000086s00011536.1
TATATATATGAAATGGCTGAAGCGAGAAGAGGCGATGAGAATCAAGGGATTAAGCTATTTGGCGCAACGATTACATTGCATATTGGTGGGGAAGTAAAGGAGGGGAAAAAGGGAAGTAGTGATGTAGATCAGACGGTGGAGGAGAGGCCAGAGAAGACCATAGCGTGCCCAAGGTGCAAGAGCATGGAAACCAAATTCTGTTACTTCAACAACTACAACATTAACCAGCCAAGGCATTTCTGCAAGAGCTGCCAGAGGTACTGGACGGCTGGTGGGGCCCTCCGCGACGTCCCAATCGGTGCCGGTCGACGGAAGGCCAAGCCGCCGTGCCATGTGGGCGGTGGTGGATTGCCGGACGGTTGCCTCTATGAGACTGCTTCCGATGATGATGGGTTAGAGCAGGGGTTGGTTTTGGATAAGTGGCGCGTTGCCACACCTCAGGGTGGTTCCCGGCAAGCCTTTCCCGCCAAGCGGCGGAGGACGACCCTAGCCTCAGCTCAGCACCAAGGTCAATAAAACACTTATTATCATCTACGAAAGCGCAGAAATTGAAATTACATACAAGGACATGAGAAGGTTTCGACAATGACAGATCACAGACCAAACCATGTATATCTTACTTATGTACTAAGATGTGAACACCAAAAAAAATGCCGCATAGCAAAATCAAACGGNGATGTTATATATGTTCAACCATGAGGAGGCGTGACGGTTCCGCTTAGTTCTTGCCGTGAGTGATAGTCAAGTCCATATACAGCTTTTTTAAGGCATGAATGAATGGACCTCAGATAATTGATTCAAGCCCTGCAGTTAAGGAATACACACATTCACGCAGTCGACCGTTCTAAACTGTATGGCGATCTAAATTGGCCNATTGCGTAAATGTGTGGATTCCTTGACGGTAGAGAATCAATTTTCATTGCACATTAGCTGTGATATGATTGTGATCCACGAAAGCTTTACCAAACGAGGAATGCGAGATAAAATGGTCAATGGACAAAGAGTGATAAGATTGTAAAAGTAAACACAAAAACCCGAAGATTAGAGTGCAAATTGTAGTTTAAGCGTTTAATTAACTTGCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	282370	284110	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011536.1	PF02701.10	zf-Dof	46	103	3.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.548
SRR1783600	control	26.226
SRR1783602	moderate drought stress	17.932
SRR1811619	moderate drought stress	17.726

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	64.238
DRR006520	Root Summer glycyrrhizin high producing strain	62.606
DRR006521	Root Winter glycyrrhizin high producing strain	0.103
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	54.763
DRR006524	Root Summer glycyrrhizin low producing strain	56.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.106
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.070
SRR2868004	Drought Stress (root)	14.666
SRR2967015	Control (root)	16.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.887
SRR9715740	Leaf	1.502
SRR9715741	Leaf	0.625
SRR9715739	Root	9.460
SRR9715742	Root	6.223
SRR9715743	Root	5.923

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.064
SRR8749028	MeJA induced 9h	4.220
SRR8749029	MeJA induced 9h	4.210
SRR8749030	Uninduced	1.721
SRR8749031	Uninduced	0.444
SRR8749032	Uninduced	1.047

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.940
SRR8400027	Control - Root	28.488