Gene detail information of Glyur000086s00011534 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15890.1 | 5.00E-101 | TRICHOME BIREFRINGENCE-LIKE 21 |
| NR | XP_003541704.1 | 0 | PREDICTED: protein YLS7-like [Glycine max] |
| Swissprot | tr|Q9LFT1|TBL21_ARATH | 7.00E-128 | Protein trichome birefringence-like 21 |
| trEMBL | tr|K7M1C7|K7M1C7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G30320.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 257615 | 272663 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011534.1 | PF14416.1 | PMR5N | 59 | 112 | 6.30E-21 |
| Glyur000086s00011534.1 | PF13839.1 | PC-Esterase | 113 | 405 | 6.30E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.045 |
| SRR1783600 | control | 34.252 |
| SRR1783602 | moderate drought stress | 14.693 |
| SRR1811619 | moderate drought stress | 14.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.533 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.914 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.588 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.351 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.609 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.487 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.389 |
| SRR2868004 | Drought Stress (root) | 28.824 |
| SRR2967015 | Control (root) | 28.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.461 |
| SRR9715740 | Leaf | 1.249 |
| SRR9715741 | Leaf | 3.740 |
| SRR9715739 | Root | 16.335 |
| SRR9715742 | Root | 20.628 |
| SRR9715743 | Root | 18.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.375 |
| SRR8749028 | MeJA induced 9h | 9.845 |
| SRR8749029 | MeJA induced 9h | 6.417 |
| SRR8749030 | Uninduced | 3.571 |
| SRR8749031 | Uninduced | 0.746 |
| SRR8749032 | Uninduced | 1.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.239 |
| SRR8400027 | Control - Root | 45.869 |