Gene detail information of Glyur000086s00011533 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42610.2 | 9.00E-62 | Protein of unknown function (DUF640) |
| NR | XP_004485894.1 | 5.56E-105 | PREDICTED: uncharacterized protein LOC101502781 [Cicer arietinum] |
| Swissprot | tr|Q9S7R3|LSH10_ARATH | 1.00E-80 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 |
| trEMBL | tr|I3T9J9|I3T9J9_MEDTR | 2.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:AFK49191.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 238881 | 239453 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011533.1 | PF04852.7 | DUF640 | 21 | 145 | 9.60E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.922 |
| SRR1783600 | control | 64.566 |
| SRR1783602 | moderate drought stress | 85.744 |
| SRR1811619 | moderate drought stress | 82.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 159.792 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 155.465 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.440 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.653 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 149.533 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 145.620 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.769 |
| SRR2868004 | Drought Stress (root) | 13.660 |
| SRR2967015 | Control (root) | 13.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.717 |
| SRR9715740 | Leaf | 1.467 |
| SRR9715741 | Leaf | 1.547 |
| SRR9715739 | Root | 41.546 |
| SRR9715742 | Root | 69.128 |
| SRR9715743 | Root | 53.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.725 |
| SRR8749028 | MeJA induced 9h | 11.049 |
| SRR8749029 | MeJA induced 9h | 27.229 |
| SRR8749030 | Uninduced | 3.407 |
| SRR8749031 | Uninduced | 2.162 |
| SRR8749032 | Uninduced | 7.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.104 |
| SRR8400027 | Control - Root | 72.412 |