Gene detail information of Glyur000086s00011526 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09850.1 | 7.00E-105 | xylem bark cysteine peptidase 3 |
| NR | KEH36599.1 | 0 | papain family cysteine protease [Medicago truncatula] |
| COG | YP_006415684.1 | 9.00E-33 | cysteine protease [Thiocystis violascens DSM 198] |
| Swissprot | tr|P43297|RD21A_ARATH | 1.00E-122 | Cysteine proteinase RD21a (Precursor) |
| trEMBL | tr|A0A072V3J5|A0A072V3J5_MEDTR | 0 | Papain family cysteine protease {ECO:0000313|EMBL:KEH36599.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 184444 | 186834 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011526.1 | PF08246.7 | Inhibitor_I29 | 53 | 112 | 6.70E-16 |
| Glyur000086s00011526.1 | PF00112.18 | Peptidase_C1 | 147 | 361 | 1.30E-77 |
| Glyur000086s00011526.1 | PF00396.13 | Granulin | 413 | 461 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.132 |
| SRR1783600 | control | 0.133 |
| SRR1783602 | moderate drought stress | 0.067 |
| SRR1811619 | moderate drought stress | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.196 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 71.968 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 74.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.039 |
| SRR2868004 | Drought Stress (root) | 0.907 |
| SRR2967015 | Control (root) | 1.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 86.377 |
| SRR9715740 | Leaf | 47.997 |
| SRR9715741 | Leaf | 36.727 |
| SRR9715739 | Root | 0.479 |
| SRR9715742 | Root | 0.110 |
| SRR9715743 | Root | 0.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.721 |
| SRR8749028 | MeJA induced 9h | 4.949 |
| SRR8749029 | MeJA induced 9h | 5.767 |
| SRR8749030 | Uninduced | 6.523 |
| SRR8749031 | Uninduced | 4.430 |
| SRR8749032 | Uninduced | 7.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.992 |
| SRR8400027 | Control - Root | 0.878 |